LOCUS BC101669 2536 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3, mRNA (cDNA clone MGC:126718 IMAGE:8069175), complete cds.
ACCESSION BC101669
VERSION BC101669.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2536)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2536)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 2 Row: I Column: 13.
FEATURES Location/Qualifiers
source 1..2536
/db_xref="H-InvDB:HIT000337024"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126718 IMAGE:8069175"
/tissue_type="Colon, PCR rescued clones"
/clone_lib="NIH_MGC_295"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCAGAAAT"
gene 1..2536
/gene="SLC9A3"
/db_xref="GeneID:6550"
/db_xref="HGNC:HGNC:11073"
/db_xref="MIM:182307"
CDS 9..2513
/gene="SLC9A3"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 3"
/protein_id="AAI01670.1"
/db_xref="GeneID:6550"
/db_xref="HGNC:HGNC:11073"
/db_xref="MIM:182307"
/translation="MWGLGARGPDRGLLLALALGGLARAGGVEVEPGGAHGESGGFQV
VTFEWAHVQDPYVIALWILVASLAKIGFHLSHKVTSVVPESALLIVLGLVLGGIVWAA
DHIASFTLTPTVFFFYLLPPIVLDAGYFMPNRLFFGNLGTILLYAVVGTVWNAATTGL
SLYGVFLSGLMGDLQIGLLDFLLFGSLMAAVDPVAVLAVFEEVHVNEVLFIIVFGESL
LNDAVTVVLYNVFESFVALGGDNVTGVDCVKGIVSFFVVSLGGTLVGVVFAFLLSLVT
RFTKHVRIIEPGFVFIISYLSYLTSEMLSLSAILAITFCGICCQKYVKANISEQSATT
VRYTMKMLASSAETIIFMFLGISAVNPFIWTWNTAFVLLTLVFISVYRAIGVVLQTWL
LNRYRMVQLEPIDQVVLSYGGLRGAVAFALVVLLDGDKVKEKNLFVSTTIIVVFFTVI
FQGLTIKPLVQWLKVKRSEHREPRLNEKLHGRAFDHILSAIEDISGQIGHNYLRDKWS
HFDRKFLSRVLMRRSAQKSRDRILNVFHELNLKDAISYVAEGERRGSLAFIRSPSTDN
VVNVDFTPRSSTVEASVSYLLRENVSAVCLDMQSLEQRRRSIRDAEDMVTHHTLQQYL
YKPRQEYKHLYSRHELTPTEDEKQDREIFHRTMRKRLESFKSTKLGLNQNKKAAKLYK
RERAQKRRNSSIPNGKLPMESPAQNFTIKEKDLELSDTEEPPNYDEEMSGGIEFLASV
TKDTASDSPAGIDNPVFSPDEALDRSLLARLPPWLSPGETVVPSQRARTQIPYSPGTF
RRLMPFRLSSKSVDSFLQADGPEERPPAALPESTHM"
BASE COUNT 452 a 817 c 776 g 491 t
ORIGIN
1 aggcggcaat gtggggactc ggggcccggg gccccgaccg ggggctgctg ctggcgctgg
61 cgctgggcgg gctggcgcgg gccgggggcg tcgaggtgga gcccggcggc gcgcacggcg
121 agagcggggg cttccaggtg gtcaccttcg agtgggccca cgtgcaggat ccctacgtca
181 tcgcgctctg gatcctcgtg gccagcttgg ccaagatcgg gttccacctg tcccacaagg
241 tcaccagcgt ggttcccgag agcgccctgc tcatcgtgct gggcctggtg ctgggcggca
301 tcgtctgggc ggccgaccac atcgcgtcct tcacactgac gcccaccgtc ttcttcttct
361 acctgctgcc ccccatcgtg ctggacgccg gctacttcat gcccaaccgc ctcttcttcg
421 gcaacctggg gaccatcctg ttgtacgccg tcgtgggtac cgtgtggaac gcggccacca
481 ccgggctgtc cctctacggc gtcttcctca gtgggctcat gggcgacctg cagattgggc
541 tgctggactt cctcctgttt ggcagcctca tggcggctgt ggacccggtg gccgtcctgg
601 ccgtgtttga ggaggtccat gtcaacgagg tcctgttcat catcgtcttc ggggagtcgc
661 tgctgaacga cgcagtcacc gtggttctgt acaatgtgtt tgaatctttc gtggcgctgg
721 gaggtgacaa cgtgactggc gtggactgcg tgaagggcat agtgtccttc ttcgtggtga
781 gcctgggggg cacgctggtg ggggtggtct tcgccttcct gctgtcgctg gtgacgcgct
841 tcaccaagca tgtgcgtatc atcgagcccg gcttcgtgtt catcatctcc tacctgtcct
901 acctgacgtc cgagatgctg tcgctgtcgg ccatcctcgc catcaccttc tgtggcatct
961 gctgtcagaa gtatgtgaag gccaacatct cggagcagtc ggccaccacc gtgcgctaca
1021 ccatgaagat gctggccagc agcgccgaga ccatcatctt catgttcctg ggtatctcgg
1081 ccgtgaaccc gttcatctgg acctggaaca cggccttcgt gctcctgacg ctggtcttca
1141 tctccgtgta ccgggccatc ggtgtggtcc tgcagacctg gcttctgaac cgctaccgca
1201 tggtgcagct ggagcccatt gaccaggtgg tcctgtccta cgggggcctg cgcggggccg
1261 tggcctttgc cctggtggtg cttctggatg gagacaaggt caaggagaag aacctgttcg
1321 tcagcaccac catcatcgta gtgttcttca ccgtcatctt ccagggcctg accatcaagc
1381 ctctggtgca gtggctgaag gtgaagagga gcgagcaccg ggaacctcgg ctcaacgaga
1441 agctgcacgg ccgcgctttc gaccacatcc tctcggccat cgaggacata tccggacaga
1501 tcgggcacaa ttatctcaga gacaagtggt cccacttcga caggaagttc ctcagcaggg
1561 tcctcatgag acggtcggcc cagaagtctc gagaccggat cctgaatgtc ttccacgagc
1621 tgaacctgaa ggatgccatc agctacgtgg ctgagggaga gcgccgcggg tccctggcct
1681 tcatccgctc ccccagcacc gacaacgtgg tcaacgtgga cttcacgcca cgatcgtcca
1741 ccgtggaggc ctctgtctcc tacctcctga gagaaaatgt cagcgctgtc tgcctggaca
1801 tgcagtctct ggagcagcga cggcggagca tccgggacgc ggaggacatg gtcacgcacc
1861 acacgctaca gcagtacctg tacaagccgc ggcaggagta caagcatctg tacagccgac
1921 acgagctcac gcccacggag gacgagaaac aggaccggga aatcttccac aggaccatgc
1981 ggaagcgcct ggagtccttc aagtcgacca agctggggct caaccagaac aagaaggcgg
2041 ccaagctgta caagcgggag cgtgcccaga agcggagaaa cagcagcatc cccaatggga
2101 agctgcccat ggagagccct gcgcagaatt tcaccatcaa ggagaaagac ttggaacttt
2161 cagacaccga ggagcccccc aactatgatg aggagatgag tggggggatc gagttcctgg
2221 ctagtgtcac caaggacaca gcgtccgact cccctgcagg aattgacaac cctgtgtttt
2281 ctccggacga ggccctggac cgcagcctcc tggccaggct gccgccctgg ctgtctcccg
2341 gggagacggt ggtcccctcg cagagggccc gcacgcagat tccctactct cccggcacct
2401 tccgccgcct gatgcccttc cgcctcagca gcaagtccgt ggactccttc ctgcaggcag
2461 acggccccga ggagcggccc cccgccgccc tccccgagtc cacacacatg tgacaccggc
2521 tccgacacgc cgctaa
//