LOCUS BC101180 1352 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblA
type, mRNA (cDNA clone IMAGE:40017264), complete cds.
ACCESSION BC101180
VERSION BC101180.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1352)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1352)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 12, 2005 this sequence version replaced BC101180.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 6 Row: l Column: 17
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1352
/db_xref="H-InvDB:HIT000336588"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40017264"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GAAATAAA sequenced from
the forward primer"
gene 1..1352
/gene="MMAA"
/db_xref="GeneID:166785"
/db_xref="HGNC:HGNC:18871"
/db_xref="MIM:607481"
CDS 805..1218
/gene="MMAA"
/codon_start=1
/product="MMAA protein"
/protein_id="AAI01181.1"
/db_xref="GeneID:166785"
/db_xref="HGNC:HGNC:18871"
/db_xref="MIM:607481"
/translation="MADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVI
RISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHP
TVREQIPLLEQKVLIGALSPGLAADFLLKAFKSRD"
BASE COUNT 425 a 266 c 293 g 368 t
ORIGIN
1 gagccaaaac gcatccagtg ttttctccag ttacaaataa aacgaatatg cccatgctgc
61 taccacatcc tcaccagcat ttcctaaaag gccttttaag agcacctttc cgatgttacc
121 acttcatctt tcactcaagt actcatctcg gatcaggaat cccatgtgct cagccgttta
181 attctcttgg actccattgt acaaagtgga tgctgctgtc agatggctta aagagaaaat
241 tatgtgtaca aacaacctta aaggaccaca cagaaggact ttctgataaa gagcaaagat
301 ttgtggataa actttatact ggtttaatcc aagggcaaag ggcctgttta gcagaggcca
361 taactcttgt agaatcaact cacagcagga aaaaggagtt agcccaggtg cttcttcaga
421 aagtattact ttaccacaga gaacaagaac aatcaaataa aggaaaacca ctagcatttc
481 gagtaggatt gtctgggccc cctggtgctg gaaaatcaac atttatagaa tattttggaa
541 aaatgcttac tgagagaggg cacaaattat ctgtgctagc tgtggaccct tcttcttgta
601 ctagtggtgg atcactctta ggtgataaaa cccgaatgac tgagttatca agagatatga
661 atgcatacat caggccatct cctactagag gaactttagg aggcgtgaca aggaccacaa
721 atgaagctat tctgttgtgt gaaggagcgg gatatgacat aattcttatt gaaaccgttg
781 ggtatcaaaa ggggtataat cgagatggca gatctggtag ctgtaactaa atctgatgga
841 gacttgattg tgccagctcg aaggatacaa gcggaatatg tgagtgcact gaaattactc
901 cgcaaacgtt cacaagtctg gaaaccaaag gtaattcgta tttctgcccg aagtggagag
961 gggatctctg aaatgtggga taaaatgaaa gatttccagg acctaatgct tgccagtggg
1021 gagctgactg ccaaacgacg gaagcaacag aaagtttgga tgtggaatct cattcaggaa
1081 agtgtgttag agcatttcag gacccacccc acagtccggg aacagattcc acttctggaa
1141 caaaaggttc tcattggggc cctgtcccca ggactagcag cagacttctt gttaaaagct
1201 tttaaaagca gagactaata aaattcatcc tgtataataa ttttacatat catttcataa
1261 agtattttaa tagaaaaatc acttgtatgc ttatattttc agtaattatt gtatggtgct
1321 cttgtcttct ttgtttgtga cccatgcttg aa
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