LOCUS BC101040 2615 bp mRNA linear HUM 08-FEB-2007
DEFINITION Homo sapiens zinc finger protein 560, mRNA (cDNA clone MGC:119491
IMAGE:40007878), complete cds.
ACCESSION BC101040
VERSION BC101040.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2615)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2615)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 6 Row: i Column: 6.
FEATURES Location/Qualifiers
source 1..2615
/db_xref="H-InvDB:HIT000336450"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119491 IMAGE:40007878"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: CCCACCCA sequenced from the reverse primer"
gene 1..2615
/gene="ZNF560"
/db_xref="GeneID:147741"
/db_xref="HGNC:HGNC:26484"
CDS 176..2548
/gene="ZNF560"
/codon_start=1
/product="zinc finger protein 560"
/protein_id="AAI01041.1"
/db_xref="GeneID:147741"
/db_xref="HGNC:HGNC:26484"
/translation="MAYCLTNCYQYSVTFEDTAVDFTQEEWILLDPVQRNLYRDVMLE
NYENVAKVGFQLFKPSVISWLEEEELRTLQQGVLQDWAIKHQTSVSALQQEFWKIQTS
NGIQMDLVTFDSVAVEFTQEEWTLLDPAQRNLYSDVMLENYKNLSSVGYQLFKPSLIS
WLEEEEELSTLPRVLQEWKMCLKTKGPALWQDNFCLKTLNGIQLARNQNGEELYDCKQ
CEDVFCKHPCLKTNMSTQNRGNTSECIQYAKDLLSLYNKTSTIRKVSVFSKHGKSFRL
ILNVQVQRKCTQDKSFEGTDYGKAFIYQSYLEAHRKTQSGEKLNEWKQCGEAFTHSTS
HAVNVETHIIKNPYECKECGKDFRYPTHLNNHMQTHIGIKPYKCKHCGKTFTVPSGFL
EHVRTHTGEKPYGCKECGKAFGTSAGLIEHIRCHAREKTFKCDHCGKAFISYPSLFGH
LRVHNGEKPYEHKEYGKAFGTSSGVIEDRRSNTGQKRFDCDQCGKVFVSFSSLFAHLR
THTGEKPFKCYKCGKPFTSSACLRIHMRTHTEERLYQCKKCGKAFTKCSYLTKHLRTH
AGEKPYECMKCGKAFTERSYLTKHLRRHSGEKPYECKKCGKAFTERSDLTKHLRRHTG
DKPYEYKDCGKAFVVSSSLVDHLRTHTGYKPYKCNACEKAYSRSCVLTQHLKTHAAEK
TSECNACGNSFRNSMCFHDRLKTLTKIKPYKCKDCGKAFTCHSDLTNHVRIHTGEKPY
KCKECGKAFRTSSGRIQHLRTHMGEKPFECDQCGKAFASFSARIAHLKTH"
BASE COUNT 837 a 533 c 563 g 682 t
ORIGIN
1 cctttgtgtt gtctggtcgt tcactacttt gagggaaaag aattttgccg ttcgcgttcg
61 attgactccg tccccaagat cctgtagccc cacggacctg gcgactccac cgtgttcggg
121 tctttctagg aacccaatct gccttcatga agaaaagaca gaggcagaaa ggaagatggc
181 ttactgcctg acaaattgtt atcagtactc cgtgaccttt gaggatacag ctgtggactt
241 cacccaggag gagtggattt tactggaccc agttcagaga aacttataca gagatgtgat
301 gctggagaat tatgagaacg tggccaaagt aggatttcag ctctttaaac ccagtgtcat
361 ctcttggttg gaagaagaag agttgagaac cttgcagcaa ggagttctcc aagactgggc
421 aataaaacat caaaccagtg tttcagcact gcagcaggag ttttggaaaa tacaaacttc
481 taatgggata caaatggacc tggtaacctt tgacagtgtg gctgtggagt tcacccagga
541 agagtggact ttactggacc cagctcagag aaacctgtac agtgatgtga tgctggagaa
601 ctacaagaac ctgtcctcag taggttacca gctcttcaaa cccagtctga tctcttggct
661 ggaggaagag gaagagttga gcacactgcc aagagttctc caagaatgga aaatgtgcct
721 gaaaaccaaa gggccagccc tttggcaaga taatttttgt ttaaaaacat taaatgggat
781 acagttggca agaaaccaaa atggagagga actctatgac tgtaagcaat gtgaagatgt
841 cttctgtaaa catccatgcc ttaagaccaa catgagtact caaaatagag gcaacacgtc
901 tgaatgtatt cagtatgcaa aagacctcct ttctctatac aataaaacct ctaccataag
961 gaaagtttct gtgttcagta agcatggaaa atctttccgc ctgattttaa atgttcaggt
1021 ccagagaaag tgtacacaag ataaatcctt tgaaggcact gactatggga aagccttcat
1081 ttatcagtca taccttgaag cacacaggaa aactcagagt ggagaaaaac tcaatgaatg
1141 gaagcaatgt ggggaagcat ttactcactc cacaagccat gctgtaaatg ttgaaacaca
1201 cattattaaa aacccctatg aatgtaagga atgtggaaaa gattttagat accctaccca
1261 ccttaataat cacatgcaaa cccacattgg gataaaacct tataaatgta agcactgtgg
1321 caaaaccttc actgtgccgt caggctttct tgaacatgta cgaactcaca ctggagagaa
1381 gccctatggg tgtaaggaat gtggtaaagc ctttggtaca tctgcaggcc ttattgaaca
1441 tataagatgt cacgccagag agaaaacctt taaatgtgac cactgtggga aagcctttat
1501 ttcttaccca tctctttttg gacatttgag agttcataat ggagagaagc catatgagca
1561 taaggaatat gggaaggcct ttggtacatc ctcaggtgtt attgaagata gaagaagtaa
1621 cacaggacag aaacgctttg attgtgacca gtgtgggaaa gtctttgttt ctttctcatc
1681 tctttttgct catttgagaa ctcacactgg tgagaagccc tttaagtgtt acaaatgtgg
1741 gaaaccattt acctcttctg cctgtcttcg tattcacatg cgaactcaca cagaagagag
1801 actctatcaa tgtaagaaat gtggtaaagc tttcactaag tgctcatatc ttaccaaaca
1861 tttacgaaca cacgctggag agaaacccta tgaatgtatg aaatgtggga aagccttcac
1921 tgagcgctca taccttacta aacatttacg aagacacagt ggagagaagc catatgaatg
1981 taagaaatgt ggaaaagcct tcacagaacg ctcagatctt actaaacatt tacgaagaca
2041 cactggagat aagccctatg aatataagga ctgtgggaaa gcctttgttg tctcctccag
2101 tctagttgat catttaagaa ctcacactgg atataaaccc tataaatgta atgcatgtga
2161 aaaagcttac agtaggtctt gtgtactaac tcaacactta aaaactcatg cagcagagaa
2221 gacctctgaa tgtaacgcat gtggaaattc ctttcgaaat tccatgtgct ttcatgatcg
2281 cttaaaaact ctcaccaaaa taaaacccta taaatgtaag gactgtggga aagccttcac
2341 ttgtcattca gatcttacta atcatgtgcg aattcacact ggagagaagc cctataaatg
2401 taaggaatgt gggaaggcct tccgtacatc ctcaggacgt attcaacatt taagaactca
2461 tatgggagag aaaccctttg aatgtgacca gtgtgggaaa gcctttgctt ctttctcagc
2521 tcgtattgca catttgaaaa cacactagag agaagccctg tggatgtgaa gaatgtggaa
2581 aaacctttgc tgtttcctca agcctaactg aacat
//