LOCUS BC101038 2616 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 4, mRNA (cDNA clone
MGC:119489 IMAGE:40007875), complete cds.
ACCESSION BC101038
VERSION BC101038.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2616)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2616)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 12, 2005 this sequence version replaced BC101038.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 5 Row: j Column: 10.
FEATURES Location/Qualifiers
source 1..2616
/db_xref="H-InvDB:HIT000336448"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119489 IMAGE:40007875"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: CGTTCAA sequenced from
the forward primer"
gene 1..2616
/gene="PCDHGC4"
/gene_synonym="PCDH-GAMMA-C4"
/db_xref="GeneID:56098"
/db_xref="HGNC:HGNC:8717"
/db_xref="MIM:606305"
CDS 1..2616
/gene="PCDHGC4"
/gene_synonym="PCDH-GAMMA-C4"
/codon_start=1
/product="protocadherin gamma subfamily C, 4"
/protein_id="AAI01039.1"
/db_xref="GeneID:56098"
/db_xref="HGNC:HGNC:8717"
/db_xref="MIM:606305"
/translation="MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTF
VGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASC
IVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDA
DVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGG
NPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGN
VTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSPAMEQHC
SLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLRIPDH
LPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDVND
NPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFI
SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVL
RPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRY
AGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAP
REGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRR
EGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPSAPMAGE
PVRPSCPPSDLLYGLEVRPLQAQQMLEGYSDPGIWLGHVLESTGLSVSAHSDVTIFVR
GNYVVDAVLCNCFVN"
BASE COUNT 553 a 718 c 688 g 657 t
ORIGIN
1 atgctccgca aggtgagaag ctggacagaa atctggcggt gggctaccct tttgttcctc
61 ttttaccacc tgggttacgt ttgtgggcag atccgctacc cggtcccaga ggagtcacag
121 gaagggactt ttgtagggaa tgtcgctcaa gatttcctgc tggatacgga cagtctgtca
181 gctcgcaggc tgcaggtcgc tggagaggtg aaccaaagac acttccgtgt ggatttggac
241 agcggagccc tgctcatcaa gaacccaatc gaccgagagg cactgtgtgg gctcagtgcc
301 agctgcatcg tgcccctgga gtttgtcacc gaaggtcctt tggaaatgta ccgagcagag
361 gtagagatcg tagatgtgaa tgatcacgcc ccccgttttc cgcggcagca gctggacttg
421 gaaattgggg aggcagctcc tccaggacag cgtttcccgt tggaaaaggc tcaggatgca
481 gatgtgggga gcaattcgat tagcagctat aggctgagct ccaatgaaca ctttgcactg
541 gatgtgaaga agcgcagcga cggcagcctg gtcccagagc tgctcctgga gaagcctttg
601 gatcgagaga agcaatcgga ctaccgcctg gtgctgactg ctgtcgatgg agggaacccg
661 ccgagatctg gcaccgcaga gctccgggta tccgtgctgg acgtaaacga caacgcccca
721 gccttccagc aatccagcta caggattagt gtgttggaga gcgcaccagc gggcatggtg
781 ctcatccagc tcaatgcctc agacccggac ctgggtccca gtggtaacgt caccttttat
841 ttcagtggtc atacccctga tcgtgtaaga aacctcttta gcctgcaccc cactactgga
901 aagcttactc ttttggggcc cctagacttt gagagtgaga attactatga atttgatgtg
961 cgggctcgcg atgggggttc tccagccatg gagcaacatt gcagccttcg agtggatctg
1021 ctggacgtaa atgacaatgc cccttacatc acagtgacct cagagcttgg aaccctcccc
1081 gagagtgcag aacctggcac tgtggtggca cttatcagtg tgcaggatcc agactcaggg
1141 tcaaacggag atgtgagcct ccgcattcct gaccacttgc catttgccct caagtctgcc
1201 ttcaggaacc agttctccct ggtgactgct ggacccttgg atcgagaggc caaatctagc
1261 tatgacatca tggtcactgc ttctgatgct gggaaccctc ctctcagtac ccacagaact
1321 attttcctca atatttcaga tgtgaatgat aatccaccct ctttctttca gaggtcacat
1381 gaggtgtttg ttcctgagaa caatcgccca ggggacctgc tttgctccct tgcagcctct
1441 gacccagact ctggcttgaa tgcgcttatc tcctactcac tcctggagcc caggaatcga
1501 gatgtatcag cttcctcttt catctctctg aacccccaga caggagctgt tcatgctact
1561 cgatcctttg actatgagca aacccagaca ctgcagtttg aggtgcaggc ccgggatcgg
1621 ggcaacccac cccttagcag cactgtaaca gttcgtctat ttgtgctgga cctcaatgac
1681 aatgctccag ctgtgctccg tcctcgggcc cggcctggtt ccttatgtcc ccaagcactg
1741 cctccatcag ttggtgctgg ccacctaatc acaaaggtga ctgctgtgga cttggattca
1801 ggttacaatg cttgggtttc ctatcagctc ctggaggccc cagatcccag cctgtttgca
1861 gtctctcgat atgctgggga ggtgcggacg gctgttccta tcccagctga cctcccacca
1921 cagaagctgg tcattgtggt aaaggatagt ggtagtccac cactctctac ctctgttact
1981 ctcttagtgt ccttagagga agacactcat ccagttgtcc cagatcttcg agaatcttca
2041 gctccaaggg aaggagaatc tcgtctaacc ctctacttgg ctgtgtccct agtggcaatt
2101 tgctttgtct cctttggctc attcgtggca ctactctcta agtgtcttcg tggggcagcc
2161 tgtggagtca catgctttcc tgctggcacc tgtgcctgtc tcaccagatc tcgaaggagg
2221 gaggggcttc ccccttccaa tgggatcctc cgaatccagc tagggtcaga tgaccctatc
2281 aagtttgttg atgtgggagg ccactctcat ggctgtacac ccttggcttc tgcacccact
2341 cggagtgata gcttcatgat ggtgaagtca cccagtgcac ctatggcagg ggagcctgtt
2401 cgcccaagct gcccaccctc tgatcttctc tatgggctag aggtgagacc tttgcaggct
2461 caacaaatgc ttgagggtta ttctgatcca ggcatatggc taggccatgt cctagagagt
2521 actggcctct cagtaagtgc ccatagtgat gtcaccattt ttgtaagagg taactatgtg
2581 gtagacgctg tgctttgtaa ctgtttcgtg aattaa
//