LOCUS BC101036 2613 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens protocadherin gamma subfamily C, 4, mRNA (cDNA clone
IMAGE:40007873), partial cds.
ACCESSION BC101036
VERSION BC101036.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2613)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2613)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 5 Row: i Column: 10.
FEATURES Location/Qualifiers
source 1..2613
/db_xref="H-InvDB:HIT000386332"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40007873"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AGAACCTT sequenced from the reverse primer"
gene <1..2613
/gene="PCDHGC4"
/gene_synonym="PCDH-GAMMA-C4"
/db_xref="GeneID:56098"
/db_xref="HGNC:HGNC:8717"
/db_xref="MIM:606305"
CDS <1..2613
/gene="PCDHGC4"
/gene_synonym="PCDH-GAMMA-C4"
/codon_start=1
/product="PCDHGC4 protein"
/protein_id="AAI01037.1"
/db_xref="GeneID:56098"
/db_xref="HGNC:HGNC:8717"
/db_xref="MIM:606305"
/translation="LRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFV
GNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCI
VPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDAD
VGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGN
PPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNV
TFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCS
LRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLRIPDHL
PFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDVNDN
PPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFIS
LNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLR
PRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYA
GEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPR
EGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRRE
GLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPSAPMAGEP
VRPSCPPSDLLYGLEVRPLQAQQMLEGYSDPGIWLGHVLESTGLSVSAHSDVTIFVRG
NYVVDAVLCNCFVN"
BASE COUNT 552 a 718 c 687 g 656 t
ORIGIN
1 ctccgcaagg tgagaagctg gacagaaatc tggcggtggg ctaccctttt gttcctcttt
61 taccacctgg gttacgtttg tgggcagatc cgctacccgg tcccagagga gtcacaggaa
121 gggacttttg tagggaatgt cgctcaagat ttcctgctgg atacggacag tctgtcagct
181 cgcaggctgc aggtcgctgg agaggtgaac caaagacact tccgtgtgga tttggacagc
241 ggagccctgc tcatcaagaa cccaatcgac cgagaggcac tgtgtgggct cagtgccagc
301 tgcatcgtgc ccctggagtt tgtcaccgaa ggtcctttgg aaatgtaccg agcagaggta
361 gagatcgtag atgtgaatga tcacgccccc cgttttccgc ggcagcagct ggacttggaa
421 attggggagg cagctcctcc aggacagcgt ttcccgttgg aaaaggctca ggatgcagat
481 gtggggagca attcgattag cagctatagg ctgagctcca atgaacactt tgcactggat
541 gtgaagaagc gcagcgacgg cagcctggtc ccagagctgc tcctggagaa gcctttggat
601 cgagagaagc aatcggacta ccgcctggtg ctgactgctg tcgatggagg gaacccgccg
661 agatctggca ccgcagagct ccgggtatcc gtgctggacg taaacgacaa cgccccagcc
721 ttccagcaat ccagctacag gattagtgtg ttggagagcg caccagcggg catggtgctc
781 atccagctca atgcctcaga cccggacctg ggtcccagtg gtaacgtcac cttttatttc
841 agtggtcata cccctgatcg tgtaagaaac ctctttagcc tgcaccccac tactggaaag
901 cttactcttt tggggcccct agactttgag agtgagaatt actatgaatt tgatgtgcgg
961 gctcgcgatg ggggttctcc agccatggag caacattgca gccttcgagt ggatctgctg
1021 gacgtaaatg acaatgcccc ttacatcaca gtgacctcag agcttggaac cctccccgag
1081 agtgcagaac ctggcactgt ggtggcactt atcagtgtgc aggatccaga ctcagggtca
1141 aacggagatg tgagcctccg cattcctgac cacttgccat ttgccctcaa gtctgccttc
1201 aggaaccagt tctccctggt gactgctgga cccttggatc gagaggccaa atctagctat
1261 gacatcatgg tcactgcttc tgatgctggg aaccctcctc tcagtaccca cagaactatt
1321 ttcctcaata tttcagatgt gaatgataat ccaccctctt tctttcagag gtcacatgag
1381 gtgtttgttc ctgagaacaa tcgcccaggg gacctgcttt gctcccttgc agcctctgac
1441 ccagactctg gcttgaatgc gcttatctcc tactcactcc tggagcccag gaatcgagat
1501 gtatcagctt cctctttcat ctctctgaac ccccagacag gagctgttca tgctactcga
1561 tcctttgact atgagcaaac ccagacactg cagtttgagg tgcaggcccg ggatcggggc
1621 aacccacccc ttagcagcac tgtaacagtt cgtctatttg tgctggacct caatgacaat
1681 gctccagctg tgctccgtcc tcgggcccgg cctggttcct tatgtcccca agcactgcct
1741 ccatcagttg gtgctggcca cctaatcaca aaggtgactg ctgtggactt ggattcaggt
1801 tacaatgctt gggtttccta tcagctcctg gaggccccag atcccagcct gtttgcagtc
1861 tctcgatatg ctggggaggt gcggacggct gttcctatcc cagctgacct cccaccacag
1921 aagctggtca ttgtggtaaa ggatagtggt agtccaccac tctctacctc tgttactctc
1981 ttagtgtcct tagaggaaga cactcatcca gttgtcccag atcttcgaga atcttcagct
2041 ccaagggaag gagaatctcg tctaaccctc tacttggctg tgtccctagt ggcaatttgc
2101 tttgtctcct ttggctcatt cgtggcacta ctctctaagt gtcttcgtgg ggcagcctgt
2161 ggagtcacat gctttcctgc tggcacctgt gcctgtctca ccagatctcg aaggagggag
2221 gggcttcccc cttccaatgg gatcctccga atccagctag ggtcagatga ccctatcaag
2281 tttgttgatg tgggaggcca ctctcatggc tgtacaccct tggcttctgc acccactcgg
2341 agtgatagct tcatgatggt gaagtcaccc agtgcaccta tggcagggga gcctgttcgc
2401 ccaagctgcc caccctctga tcttctctat gggctagagg tgagaccttt gcaggctcaa
2461 caaatgcttg agggttattc tgatccaggc atatggctag gccatgtcct agagagtact
2521 ggcctctcag taagtgccca tagtgatgtc accatttttg taagaggtaa ctatgtggta
2581 gacgctgtgc tttgtaactg tttcgtgaat taa
//