LOCUS BC101032 2591 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 13 (GalNAc-T13), mRNA (cDNA clone
MGC:119459 IMAGE:40007711), complete cds.
ACCESSION BC101032
VERSION BC101032.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2591)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2591)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC101032.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 7 Row: e Column: 6.
FEATURES Location/Qualifiers
source 1..2591
/db_xref="H-InvDB:HIT000336443"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119459 IMAGE:40007711"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GAACCCAC sequenced from
the forward primer"
gene 1..2591
/gene="GALNT13"
/gene_synonym="GalNAc-T13"
/gene_synonym="KIAA1918"
/db_xref="GeneID:114805"
/db_xref="HGNC:HGNC:23242"
/db_xref="MIM:608369"
CDS 1..1686
/gene="GALNT13"
/gene_synonym="GalNAc-T13"
/gene_synonym="KIAA1918"
/codon_start=1
/product="GALNT13 protein"
/protein_id="AAI01033.1"
/db_xref="GeneID:114805"
/db_xref="HGNC:HGNC:23242"
/db_xref="MIM:608369"
/translation="MRRFVYCKVVLATSLMWVLVDVFLLLYFSECNKCDDKKERSLLP
ALRAVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRL
EGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERD
FLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWL
EPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDR
RKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLE
IVTCSHVGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDY
GDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKEN
EKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLNGPVIMLKCHHMRGNQLWEYD
AESCLSVNKVADGSQHPTVETCNDSTLQKWLLRNYTRMEIFRNIFGNSTDYIL"
BASE COUNT 828 a 436 c 561 g 766 t
ORIGIN
1 atgaggagat ttgtctactg caaggtggtt ctagccactt cgctgatgtg ggttcttgtt
61 gatgtcttct tactgctgta cttcagtgaa tgtaacaaat gtgatgacaa gaaggagaga
121 tctctgctgc ctgcattgag ggctgttatt tcaagaaacc aagaagggcc aggagaaatg
181 ggaaaagctg tgttgattcc taaagatgac caggagaaaa tgaaagagct gtttaaaatc
241 aatcagttta accttatggc cagtgatttg attgccctta atagaagtct gccagatgta
301 agattagaag gatgtaagac aaaagtctac cctgatgaac ttccaaacac aagtgtagtc
361 attgtgtttc ataatgaagc ttggagcact ctccttagaa ctgtttacag tgtgataaat
421 cgttccccac actatctact ctcagaggtc atcttggtag atgatgccag tgaaagagat
481 tttctcaagt tgacattaga gaattacgtg aaaaatttag aagtgccagt aaaaattatt
541 aggatggaag aacgctctgg gttaatacgt gcccgtcttc gaggagcagc tgcttcaaaa
601 gggcaggtca taacttttct tgatgcacac tgtgaatgca cgttaggatg gctggagcct
661 ttgctggcaa gaataaagga agacaggaaa acggttgtct gccctatcat tgatgtgatt
721 agtgatgata cttttgaata tatggctggg tcagacatga cttatggggg ttttaactgg
781 aaactgaatt tccgctggta tcctgttccc caaagagaaa tggacaggag gaaaggagac
841 agaacattac ctgtcaggac ccctactatg gctggtggcc tattttctat tgacagaaac
901 tactttgaag agataggaac ttacgatgca ggaatggata tctggggtgg agagaatctt
961 gaaatgtctt ttaggatttg gcaatgtgga ggctccttgg agattgttac ttgctcccat
1021 gttggtcatg tttttcggaa ggcaactcca tacacttttc ctggtggcac tggtcatgtc
1081 atcaacaaga acaacaggag actggcagaa gtttggatgg atgaatttaa agatttcttc
1141 tacatcatat ccccaggtgt tgtcaaagtg gattatggag atgtgtcagt cagaaaaaca
1201 ctaagagaaa atctgaagtg taagcccttt tcttggtacc tagaaaacat ctatccggac
1261 tcccagatcc caagacgtta ttactcactt ggtgagataa gaaatgttga aaccaatcag
1321 tgtttagaca acatgggccg caaggaaaat gaaaaagtgg gtatattcaa ctgtcatggt
1381 atgggaggaa atcaggtatt ttcttacact gctgacaaag aaatccgaac cgatgacttg
1441 tgcttggatg tttctagact caatggacct gtaatcatgt taaaatgcca ccatatgaga
1501 ggaaatcagt tatgggaata tgatgctgag tcttgtctct cagtgaacaa agtagctgat
1561 ggctcccagc atcctactgt ggaaacctgt aatgatagca ctttgcaaaa atggctacta
1621 agaaactata caagaatgga aatttttaga aatatttttg ggaattctac tgattacatt
1681 ctctaatgat ttttggagag actcacgttg cgacatgtta acagtaacca atgtctcgat
1741 gaaccttctg aagaagacaa aatggtgcct acaatgcagg actgtagtgg aagcagatcc
1801 caacagtggc tgctaaggaa catgaccttg ggcacatgaa gatcatgtcc tccaagccat
1861 gaaagtgtct acgcttttgt ttttccatta tttcaattgg gggaaaatat taactttgct
1921 gaattgaaag ttttaaaaat ccttttagta ttctaaaaca caattgtttc taattcgttt
1981 ctagaaatgt ttgcttattt ccctactaaa atttgtatct gatcaaagca cataagaata
2041 taaataatag caaactacta ttaaacaaca gaacaacttg taaaacaaat tgtgtttgct
2101 ttaagaaaaa tctttattgc actcatgtca tagggttaat tggaggttat tttatttttg
2161 gttgtcatgg tgattgaaag agataatgta aatgccttat aaaatcttca ttatgaaata
2221 ttatcagttg ctttataaac tcactctttt tatggatcct tcatggaaac atgtttgatt
2281 tctgtgtcta caacagggcc acatattaaa ttacttctga atggtgaatt catcttacaa
2341 aatgttccaa gttttggaca aggaaaaaca ttacattgga tattgaattc atggagcctt
2401 tacagaagca tcacatttaa accaatgtga attcaaaaaa gagaaggaaa ctttttaaat
2461 tcaatttaga gtacataaaa aaagaaatcc gcgaagcatt gaggggaaca agatgagtct
2521 aatccgcagc acttcgatca ctgtgagaga actcaaagtg ggttgcaatc attcctaaca
2581 caggctgaaa c
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