LOCUS BC100990 1593 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens RAR-related orphan receptor A, mRNA (cDNA clone MGC:119329 IMAGE:40005787), complete cds. ACCESSION BC100990 VERSION BC100990.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1593) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1593) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 12, 2005 this sequence version replaced BC100990.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 5 Row: h Column: 10. FEATURES Location/Qualifiers source 1..1593 /db_xref="H-InvDB:HIT000336402" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:119329 IMAGE:40005787" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: CGCAATAA sequenced from the forward primer" gene 1..1593 /gene="RORA" /gene_synonym="NR1F1" /gene_synonym="ROR1" /gene_synonym="ROR2" /gene_synonym="ROR3" /gene_synonym="RZRA" /db_xref="GeneID:6095" /db_xref="HGNC:HGNC:10258" /db_xref="MIM:600825" CDS 42..1448 /gene="RORA" /gene_synonym="NR1F1" /gene_synonym="ROR1" /gene_synonym="ROR2" /gene_synonym="ROR3" /gene_synonym="RZRA" /codon_start=1 /product="RAR-related orphan receptor A" /protein_id="AAI00991.1" /db_xref="GeneID:6095" /db_xref="HGNC:HGNC:10258" /db_xref="MIM:600825" /translation="MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRR SQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLY AEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKAD SAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAEL EHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAI QYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPD VFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQ KIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPP LYKELFTSEFEPAMQIDG" BASE COUNT 493 a 362 c 354 g 384 t ORIGIN 1 ggaccatccg ctctccctgc gctctccgca ccgcggctta aatgatgtat tttgtgatcg 61 cagcgatgaa agctcaaatt gaaattattc catgcaagat ctgtggagac aaatcatcag 121 gaatccatta tggtgtcatt acatgtgaag gctgcaaggg ctttttcagg agaagtcagc 181 aaagcaatgc cacctactcc tgtcctcgtc agaagaactg tttgattgat cgaaccagta 241 gaaaccgctg ccaacactgt cgattacaga aatgccttgc cgtagggatg tctcgagatg 301 ctgtaaaatt tggccgaatg tcaaaaaagc agagagacag cttgtatgca gaagtacaga 361 aacaccggat gcagcagcag cagcgcgacc accagcagca gcctggagag gctgagccgc 421 tgacgcccac ctacaacatc tcggccaacg ggctgacgga acttcacgac gacctcagta 481 actacattga cgggcacacc cctgagggga gtaaggcaga ctccgccgtc agcagcttct 541 acctggacat acagccttcc ccagaccagt caggtcttga tatcaatgga atcaaaccag 601 aaccaatatg tgactacaca ccagcatcag gcttctttcc ctactgttcg ttcaccaacg 661 gcgagacttc cccaactgtg tccatggcag aattagaaca ccttgcacag aatatatcta 721 aatcgcatct ggaaacctgc caatacttga gagaagagct ccagcagata acgtggcaga 781 cctttttaca ggaagaaatt gagaactatc aaaacaagca gcgggaggtg atgtggcaat 841 tgtgtgccat caaaattaca gaagctatac agtatgtggt ggagtttgcc aaacgcattg 901 atggatttat ggaactgtgt caaaatgatc aaattgtgct tctaaaagca ggttctctag 961 aggtggtgtt tatcagaatg tgccgtgcct ttgactctca gaacaacacc gtgtactttg 1021 atgggaagta tgccagcccc gacgtcttca aatccttagg ttgtgaagac tttattagct 1081 ttgtgtttga atttggaaag agtttatgtt ctatgcacct gactgaagat gaaattgcat 1141 tattttctgc atttgtactg atgtcagcag atcgctcatg gctgcaagaa aaggtaaaaa 1201 ttgaaaaact gcaacagaaa attcagctag ctcttcaaca cgtcctacag aagaatcacc 1261 gagaagatgg aatactaaca aagttaatat gcaaggtgtc tacattaaga gccttatgtg 1321 gacgacatac agaaaagcta atggcattta aagcaatata cccagacatt gtgcgacttc 1381 attttcctcc attatacaag gagttgttca cttcagaatt tgagccagca atgcaaattg 1441 atgggtaaat gttatcacct aagcacttct agaatgtctg aagtacaaac atgaaaaaca 1501 aacaaaaaaa ttaaccgaga cactttatat ggccctgcac agacctggag cgccacacac 1561 tgcacatctt ttggtgatcg gggtcaggca aag //