LOCUS BC100988 1593 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens RAR-related orphan receptor A, mRNA (cDNA clone
MGC:119327 IMAGE:40005785), complete cds.
ACCESSION BC100988
VERSION BC100988.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1593)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1593)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 5 Row: g Column: 10.
FEATURES Location/Qualifiers
source 1..1593
/db_xref="H-InvDB:HIT000336400"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119327 IMAGE:40005785"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: ATATTCAA sequenced from the reverse primer"
gene 1..1593
/gene="RORA"
/gene_synonym="NR1F1"
/gene_synonym="ROR1"
/gene_synonym="ROR2"
/gene_synonym="ROR3"
/gene_synonym="RZRA"
/db_xref="GeneID:6095"
/db_xref="HGNC:HGNC:10258"
/db_xref="MIM:600825"
CDS 42..1448
/gene="RORA"
/gene_synonym="NR1F1"
/gene_synonym="ROR1"
/gene_synonym="ROR2"
/gene_synonym="ROR3"
/gene_synonym="RZRA"
/codon_start=1
/product="RAR-related orphan receptor A"
/protein_id="AAI00989.1"
/db_xref="GeneID:6095"
/db_xref="HGNC:HGNC:10258"
/db_xref="MIM:600825"
/translation="MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRR
SQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLY
AEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKAD
SAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAEL
EHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAI
QYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPD
VFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQ
KIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPP
LYKELFTSEFEPAMQIDG"
BASE COUNT 493 a 362 c 354 g 384 t
ORIGIN
1 ggaccatccg ctctccctgc gctctccgca ccgcggctta aatgatgtat tttgtgatcg
61 cagcgatgaa agctcaaatt gaaattattc catgcaagat ctgtggagac aaatcatcag
121 gaatccatta tggtgtcatt acatgtgaag gctgcaaggg ctttttcagg agaagtcagc
181 aaagcaatgc cacctactcc tgtcctcgtc agaagaactg tttgattgat cgaaccagta
241 gaaaccgctg ccaacactgt cgattacaga aatgccttgc cgtagggatg tctcgagatg
301 ctgtaaaatt tggccgaatg tcaaaaaagc agagagacag cttgtatgca gaagtacaga
361 aacaccggat gcagcagcag cagcgcgacc accagcagca gcctggagag gctgagccgc
421 tgacgcccac ctacaacatc tcggccaacg ggctgacgga acttcacgac gacctcagta
481 actacattga cgggcacacc cctgagggga gtaaggcaga ctccgccgtc agcagcttct
541 acctggacat acagccttcc ccagaccagt caggtcttga tatcaatgga atcaaaccag
601 aaccaatatg tgactacaca ccagcatcag gcttctttcc ctactgttcg ttcaccaacg
661 gcgagacttc cccaactgtg tccatggcag aattagaaca ccttgcacag aatatatcta
721 aatcgcatct ggaaacctgc caatacttga gagaagagct ccagcagata acgtggcaga
781 cctttttaca ggaagaaatt gagaactatc aaaacaagca gcgggaggtg atgtggcaat
841 tgtgtgccat caaaattaca gaagctatac agtatgtggt ggagtttgcc aaacgcattg
901 atggatttat ggaactgtgt caaaatgatc aaattgtgct tctaaaagca ggttctctag
961 aggtggtgtt tatcagaatg tgccgtgcct ttgactctca gaacaacacc gtgtactttg
1021 atgggaagta tgccagcccc gacgtcttca aatccttagg ttgtgaagac tttattagct
1081 ttgtgtttga atttggaaag agtttatgtt ctatgcacct gactgaagat gaaattgcat
1141 tattttctgc atttgtactg atgtcagcag atcgctcatg gctgcaagaa aaggtaaaaa
1201 ttgaaaaact gcaacagaaa attcagctag ctcttcaaca cgtcctacag aagaatcacc
1261 gagaagatgg aatactaaca aagttaatat gcaaggtgtc tacattaaga gccttatgtg
1321 gacgacatac agaaaagcta atggcattta aagcaatata cccagacatt gtgcgacttc
1381 attttcctcc attatacaag gagttgttca cttcagaatt tgagccagca atgcaaattg
1441 atgggtaaat gttatcacct aagcacttct agaatgtctg aagtacaaac atgaaaaaca
1501 aacaaaaaaa ttaaccgaga cactttatat ggccctgcac agacctggag cgccacacac
1561 tgcacatctt ttggtgatcg gggtcaggca aag
//