LOCUS BC100942 1260 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens V-set and transmembrane domain containing 1, mRNA
(cDNA clone MGC:119160 IMAGE:40004094), complete cds.
ACCESSION BC100942
VERSION BC100942.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1260)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1260)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 12, 2005 this sequence version replaced BC100942.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 7 Row: d Column: 5
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1260
/db_xref="H-InvDB:HIT000336355"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119160 IMAGE:40004094"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GGCCTAC sequenced from
the forward primer"
gene 1..1260
/gene="VSTM1"
/gene_synonym="UNQ3033"
/db_xref="GeneID:284415"
/db_xref="HGNC:HGNC:29455"
CDS 154..678
/gene="VSTM1"
/gene_synonym="UNQ3033"
/codon_start=1
/product="VSTM1 protein"
/protein_id="AAI00943.1"
/db_xref="GeneID:284415"
/db_xref="HGNC:HGNC:29455"
/translation="MTAEFLSLLCLGLCLGYEDEKKNEKPPKPSLHAWPSSVVEAESN
VTLKCQAHSQNVTFVLRKVNDSGYKQEQSSAENEAEFPFTDLKPKDAGRYFCAYKTTA
SHEWSESSEHLQLVVTDKHDELEAPSMKTDTRTIFVAIFSCISILLLFLSVFIIYRCS
QHSELRERKGREGE"
BASE COUNT 303 a 374 c 308 g 275 t
ORIGIN
1 gggcagagaa ccagagtgtc agagcaaaac ctcctctatc tgcacatcct ggggacgaac
61 cgggcagccg gagagctgcg gccggcccag tcccgctccg cctttgaagg gtaaaaccca
121 aggcggggcc ttggttctgg cagaagggac gctatgaccg cagaattcct ctccctgctt
181 tgcctcgggc tgtgtctggg ctacgaagat gagaaaaaga atgagaaacc gcccaagccc
241 tccctccacg cctggcccag ctcggtggtt gaagccgaga gcaatgtgac cctgaagtgt
301 caggctcatt cccagaatgt gacatttgtg ctgcgcaagg tgaacgactc tgggtacaag
361 caggaacaga gctcggcaga aaacgaagct gaattcccct tcacggacct gaagcctaag
421 gatgctggga ggtacttttg tgcctacaag acaacagcct cccatgagtg gtcagaaagc
481 agtgaacact tgcagctggt ggtcacagat aaacacgatg aacttgaagc tccctcaatg
541 aaaacagaca ccagaaccat ctttgtcgcc atcttcagct gcatctccat ccttctcctc
601 ttcctctcag tcttcatcat ctacagatgc agccagcaca gtgagctcag agaacgcaaa
661 gggagagagg gggagtgaag gattttctcg gtaggtaaat tcctcctgca ttttttgtag
721 gttcatcatc tgaggaatcc accaagaggt agatgcttgg catagctcat gctccactta
781 ttcccatgtc attctcaagg gaacccattg gcacatccgg gattggcacc ctgagccccc
841 accccagccc attctgtgac cttcctcctc tcccttcttc tcccttcctc tcccctccat
901 tgccctcacc ctctccccga aatcttcaca tcccatcctt tcacgtgtgt ctctctcttt
961 cagaaccagc cattccaaac ttccggagca ggaggctgcc gaggcagatt tatccaatat
1021 ggaaagggta tctctctcga cggcagaccc ccaaggagtg acctatgctg agctaagcac
1081 cagcgccctg tctgaggcag cttcagacac cacccaggag cccccaggat ctcatgaata
1141 tgcggcactg aaagtgtagc aagaagacag ccctggccac taaaggaggg gggatcgtgc
1201 tggccaaggt tatcggaaat ctggagatgc agatactgtg tttccttgct cttcgtccat
//