LOCUS BC100872 642 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens interferon, epsilon, mRNA (cDNA clone MGC:119020 IMAGE:40003065), complete cds. ACCESSION BC100872 VERSION BC100872.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 642) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 642) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 12, 2005 this sequence version replaced BC100872.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 6 Row: d Column: 19. FEATURES Location/Qualifiers source 1..642 /db_xref="H-InvDB:HIT000336294" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:119020 IMAGE:40003065" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: TGACTTT sequenced from the forward primer" gene 1..642 /gene="IFNE" /gene_synonym="IFN-E" /gene_synonym="IFNE1" /gene_synonym="IFNT1" /gene_synonym="PRO655" /db_xref="GeneID:338376" /db_xref="HGNC:HGNC:18163" CDS 7..633 /gene="IFNE" /gene_synonym="IFN-E" /gene_synonym="IFNE1" /gene_synonym="IFNT1" /gene_synonym="PRO655" /codon_start=1 /product="interferon, epsilon" /protein_id="AAI00873.1" /db_xref="GeneID:338376" /db_xref="HGNC:HGNC:18163" /translation="MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNK LQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWE ENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDY STCAWAIVQVEISRCLFFVFSLTEKLSKQGRPLNDMKQELTTEFRSPR" BASE COUNT 198 a 143 c 136 g 165 t ORIGIN 1 ttcaccatga ttatcaagca cttctttgga actgtgttgg tgctgctggc ctctaccact 61 atcttctctc tagatttgaa actgattatc ttccagcaaa gacaagtgaa tcaagaaagt 121 ttaaaactct tgaataagtt gcaaaccttg tcaattcagc agtgtctacc acacaggaaa 181 aactttctgc ttcctcagaa gtctttgagt cctcagcagt accaaaaagg acacactctg 241 gccattctcc atgagatgct tcagcagatc ttcagcctct tcagggcaaa tatttctctg 301 gatggttggg aggaaaacca cacggagaaa ttcctcattc aacttcatca acagctagaa 361 tacctagaag cactcatggg actggaagca gagaagctaa gtggtacttt gggtagtgat 421 aaccttagat tacaagttaa aatgtacttc cgaaggatcc atgattacct ggaaaaccag 481 gactacagca cctgtgcctg ggccattgtc caagtagaaa tcagccgatg tctgttcttt 541 gtgttcagtc tcacagaaaa actgagcaaa caaggaagac ccttgaacga catgaagcaa 601 gagcttacta cagagtttag aagcccgagg taggtggagg ga //