LOCUS BC100287 1459 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens AF4/FMR2 family, member 4, mRNA (cDNA clone
IMAGE:6167752), partial cds.
ACCESSION BC100287
VERSION BC100287.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1459)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1459)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: g Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 70994930.
FEATURES Location/Qualifiers
source 1..1459
/db_xref="H-InvDB:HIT000336177"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6167752"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1459
/gene="AFF4"
/gene_synonym="AF5Q31"
/gene_synonym="MCEF"
/db_xref="GeneID:27125"
/db_xref="HGNC:HGNC:17869"
/db_xref="IMGT/GENE-DB:17869"
/db_xref="MIM:604417"
CDS 361..>1459
/gene="AFF4"
/gene_synonym="AF5Q31"
/gene_synonym="MCEF"
/codon_start=1
/product="AFF4 protein"
/protein_id="AAI00288.1"
/db_xref="GeneID:27125"
/db_xref="HGNC:HGNC:17869"
/db_xref="IMGT/GENE-DB:17869"
/db_xref="MIM:604417"
/translation="MNREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYKVTSK
EDKLSSRIQSMLGNYDEMKDFIGDRSIPKLVAIPKPTVPPSADEKSNPNFFEQRHGGS
HQSSKWTPVGPAPSTSQSQKRSSGLQSGHSSQRTSAGSSSGTNSSGQRHDRESYNNSG
SSSRKKGQHGSEHSKSRSSSPGKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDA
NWDSPSRVPFSSGQHSTQSFPPSLMSKSNSMLQKPTAYVRPMDGQESMEPKLSSEHYS
SQSHGNSMTELKPSSKAHLTKLKIPSQPLDASASGDVSCVDEILKEMTHSWPPPLTAI
HTPCKTEPSKFPFPTKESQQSNFGTGEQKKKK"
BASE COUNT 388 a 430 c 359 g 282 t
ORIGIN
1 caggagtcca gctgccgtcg ccgccgccag cggacggggc ggggatcctg gtgccaggtc
61 ttcgttaacc cgcccccgcc gcctcagtca gctgtcccag cccgggcccg accgtcatgg
121 agcggtgcgg ggcctacgcc tgttccgtgt gaggcgcatc gctgccgccg ccgccgacgc
181 cgccttcgtt tgtcgaggcc tccggaaccc ccgccgcctc ccggagcccc tcgcccttgg
241 cagcctgtca ccgccccctg ggcgggctcg aatgcgcgtc cggtgaaggt gcaggcccgg
301 cgccgccact gccgcagcca ggagatggtt cgggcctagc ggagccggga ctggagcaac
361 atgaaccgtg aagaccggaa tgtgctgcgt atgaaagaac gggaaaggcg gaatcaggaa
421 attcagcagg gcgaagacgc cttcccacct agctctcctc tctttgcaga gccatacaaa
481 gttactagca aagaagataa gttatcaagt cgtattcaga gtatgcttgg aaactacgat
541 gaaatgaagg atttcatagg agacagatct ataccaaagc ttgttgcaat tcccaagcct
601 acagtaccac catcagcaga tgaaaaatct aacccaaatt tctttgaaca gagacatgga
661 ggctctcatc agagtagcaa atggactcca gtaggacccg cacccagcac ttctcagtct
721 cagaaacggt cctcaggctt acagagtgga catagtagcc agcggaccag cgcaggtagc
781 agtagtggca ctaacagtag tggtcagagg cacgaccgtg agtcatataa caatagtggg
841 agcagtagcc ggaaaaaagg ccagcatgga tcagaacact ccaaatcacg ttcttccagc
901 cctggaaaac cccaggctgt ttcttcatta aactctagtc attccaggtc tcatgggaat
961 gatcaccata gcaaggaaca tcaacgctcc aaatcacctc gggaccctga tgcaaactgg
1021 gattctcctt cccgtgtacc tttttcaagt gggcagcact caactcaatc tttcccaccc
1081 tcattgatgt caaagtccaa ttcaatgtta cagaaaccca ctgcctatgt gcggcccatg
1141 gacggacagg agtccatgga accaaagctg tcctctgagc actacagcag ccaatcccat
1201 ggcaacagca tgactgagct gaagcccagc agcaaagcac atctcaccaa gctgaaaata
1261 ccttcccaac cactggatgc atcagcttct ggtgatgtga gctgtgtgga tgaaatccta
1321 aaagagatga cgcattcatg gcctccccct ctaacggcta ttcatacacc atgcaaaaca
1381 gaaccttcca aatttccttt tccaactaag gagtctcagc agtccaattt tggcactgga
1441 gaacaaaaaa aaaaaaaaa
//