LOCUS BC100276 1097 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens LYR motif containing 5, mRNA (cDNA clone MGC:117195
IMAGE:6178563), complete cds.
ACCESSION BC100276
VERSION BC100276.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1097)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1097)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: h Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48717238.
FEATURES Location/Qualifiers
source 1..1097
/db_xref="H-InvDB:HIT000336166"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:117195 IMAGE:6178563"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1097
/gene="LYRM5"
/db_xref="GeneID:144363"
/db_xref="HGNC:HGNC:27052"
CDS 117..383
/gene="LYRM5"
/codon_start=1
/product="LYR motif containing 5"
/protein_id="AAI00277.1"
/db_xref="GeneID:144363"
/db_xref="HGNC:HGNC:27052"
/translation="MANSLRGEVLKLYKNLLYLGRDYPKGADYFKKRLKNIFLKNKDV
KNPEKIKELIAQGEFVMKELEALYFLRKYRAMKQRYYSDTNKTN"
BASE COUNT 395 a 192 c 173 g 337 t
ORIGIN
1 ccaccccgct tcgcagtaga cggacagagg agtcgtagcg gtcgaggctt ttgcggctcc
61 ggcgtgccgg aaagtatgtt atgcataaaa gtggataatt tacatgataa atgaaaatgg
121 ccaattcttt aagaggagaa gtactaaaac tttataaaaa tctgctgtat cttggacgag
181 actatccaaa aggagcagac tattttaaaa agcgtttgaa gaacattttc cttaaaaaca
241 aagatgtgaa gaatccagag aagatcaaag aacttattgc acagggcgaa tttgtaatga
301 aagagctaga agctttgtac ttccttagga aatacagagc tatgaaacaa cgctattatt
361 cagataccaa caaaactaat tgatcattac tactttaatt tagctatcag tgccagctgt
421 ttatgtatac cagatgttgt aaaataattc taacttaaaa tgggaagata tacatgttgt
481 gtaaaaaatc cctgagctgc cctactgaac taaataggtt tcaacttctg ttcatacgga
541 gaaagtatca gcaactttat gctcaatttt gatacaaaca tagcaattta gctatactac
601 cgatcataaa ttaatgagca cccaattttg aatgaaaata taatacactt aatcctctaa
661 cttaatagga cttagccaat tatttttagc ttatttctcc attttactga cgagaatgcc
721 atttaccgaa catttaataa gcaaaataat ttcttacaca cttcttctct taacttttga
781 aaggaatccc ttattttttc acccaatttg gtatattaac agcacatact caaggttcac
841 tacaaaacaa acagttcctg gtaatgattt aaatgtagtt atagaaataa ataatatgta
901 tggagtcatt acttctgacc ttgaaatagc ctgctggtga ctggcattaa catacataac
961 taactattca attatttcca ttattaatgt tgctgctgct acctttgggc ctaaaaccaa
1021 gtcacctgtt gtgtatcaat taccttcttt gataaaagga aataaataaa taatgttatc
1081 ctaaaaaaaa aaaaaaa
//