LOCUS BC099662 1400 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens chemokine (C-C motif) ligand 16, mRNA (cDNA clone
MGC:117051 IMAGE:40009719), complete cds.
ACCESSION BC099662
VERSION BC099662.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1400)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1400)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Jun 29, 2006 this sequence version replaced BC099662.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 2 Row: k Column: 20.
FEATURES Location/Qualifiers
source 1..1400
/db_xref="H-InvDB:HIT000336078"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:117051 IMAGE:40009719"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TGTATCCT sequenced from the reverse primer"
gene 1..1400
/gene="CCL16"
/gene_synonym="CKb12"
/gene_synonym="HCC-4"
/gene_synonym="ILINCK"
/gene_synonym="LCC-1"
/gene_synonym="LEC"
/gene_synonym="LMC"
/gene_synonym="Mtn-1"
/gene_synonym="NCC-4"
/gene_synonym="NCC4"
/gene_synonym="SCYL4"
/db_xref="GeneID:6360"
/db_xref="HGNC:HGNC:10614"
/db_xref="MIM:601394"
CDS 42..404
/gene="CCL16"
/gene_synonym="CKb12"
/gene_synonym="HCC-4"
/gene_synonym="ILINCK"
/gene_synonym="LCC-1"
/gene_synonym="LEC"
/gene_synonym="LMC"
/gene_synonym="Mtn-1"
/gene_synonym="NCC-4"
/gene_synonym="NCC4"
/gene_synonym="SCYL4"
/codon_start=1
/product="chemokine (C-C motif) ligand 16"
/protein_id="AAH99662.1"
/db_xref="GeneID:6360"
/db_xref="HGNC:HGNC:10614"
/db_xref="MIM:601394"
/translation="MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEK
VLPRRLVVGYRKALNCHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLS
TVKIITAKNGQPQLLNSQ"
BASE COUNT 378 a 347 c 294 g 381 t
ORIGIN
1 tcattcggct ctccctgaag ctgtactgcc tcgctgagag gatgaaggtc tccgaggctg
61 ccctgtctct ccttgtcctc atccttatca ttacttcggc ttctcgcagc cagccaaaag
121 ttcctgagtg ggtgaacacc ccatccacct gctgcctgaa gtattatgag aaagtgttgc
181 caaggagact agtggtggga tacagaaagg ccctcaactg tcacctgcca gcaatcatct
241 tcgtcaccaa gaggaaccga gaagtctgca ccaaccccaa tgacgactgg gtccaagagt
301 acatcaagga tcccaaccta cctttgctgc ctaccaggaa cttgtccacg gttaaaatta
361 ttacagcaaa gaatggtcaa ccccagctcc tcaactccca gtgatgacca ggctttagtg
421 gaagcccttg tttacagaag agaggggtaa acctatgaaa acaggggaag ccttattagg
481 ctgaaactag ccagtcacat tgagagaagc agaacaatga tcaaaataaa ggagaagtat
541 ttcgaatatt ttctcaatct taggaggaaa taccaaagtt aagggacgtg ggcagaggta
601 cgctctttta tttttatatt tatattttta tttttttgag atagggtctt actctgtcac
661 ccaggctgga gtgcagtggt gtgatcttgg ctcacttgat cttggctcac tgtaacctcc
721 acctcccagg ctcaagtgat cctcccaccc cagcctcccg agtagctggg actacaggct
781 tgcgccacca cacctggcta atttttgtat ttttggtaga gacgggattc taccatgttg
841 cccaggctgg tctcaaactc gtgtgcccaa gcaatccacc tgcctcagcc ttccaaaagt
901 gctgggatta caggcgtgag ccaccacatc cggccagtgc actcttaata cacagaaaaa
961 tatatttcac atccttctcc tgctctcttt caattcctca cttcacacca gtacacaagc
1021 cattctaaat acttagccag tttccagcct tccagatgat ctttgccctc tgggtcttga
1081 cccattaaga gccccataga actcttgatt tttcctgtcc atctttatgg atttttctgg
1141 atctatattt tcttcaatta ttctttcatt ttataatgca actttttcat aggaagtccg
1201 gatgggaata ttcacattaa tcatttttgc agagactttg ctagatcctc tcatattttg
1261 tcttcctcag ggtggcaggg gtacagagag tgcctgattg gaaaaaaaaa aaagagagag
1321 agagagaaga agaagaagaa gagacacaaa tctctacctc ccatgttaag ctttgcagga
1381 cagggaaaga aagggtatga
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