LOCUS BC098573 2827 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1), mRNA (cDNA clone MGC:111389 IMAGE:30925462), complete cds. ACCESSION BC098573 VERSION BC098573.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2827) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2827) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUL-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mary Hendrix cDNA Library Preparation: M. Bento Soares, University of Iowa cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 222 Row: c Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18860908. FEATURES Location/Qualifiers source 1..2827 /db_xref="H-InvDB:HIT000336024" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:111389 IMAGE:30925462" /tissue_type="Chondrosarcoma Lung Metastasis" /clone_lib="NIH_MGC_212" /lab_host="DH10B" /note="Vector: pYX-ASC" gene 1..2827 /gene="SNTB1" /gene_synonym="59-DAP" /gene_synonym="A1B" /gene_synonym="BSYN2" /gene_synonym="DAPA1B" /gene_synonym="FLJ22442" /gene_synonym="SNT2" /gene_synonym="TIP-43" /db_xref="GeneID:6641" /db_xref="HGNC:HGNC:11168" /db_xref="MIM:600026" CDS 187..1803 /gene="SNTB1" /gene_synonym="59-DAP" /gene_synonym="A1B" /gene_synonym="BSYN2" /gene_synonym="DAPA1B" /gene_synonym="FLJ22442" /gene_synonym="SNT2" /gene_synonym="TIP-43" /codon_start=1 /product="syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)" /protein_id="AAH98573.1" /db_xref="GeneID:6641" /db_xref="HGNC:HGNC:11168" /db_xref="MIM:600026" /translation="MAVAAAAAAAGPAGAGGGRAQRSGLLEVLVRDRWHKVLVNLSED ALVLSSEEGAAAYNGIGTATNGSFCRGAGAGHPGAGGAQPPDSPAGVRTAFTDLPEQV PESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAI LSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGWETPPPE SPRLGGSTSDPPSSQSFSFHRDRKSIPLKMCYVTRSMALADPENRQLEIHSPDAKHTV ILRSKDSATAQAWFSAIHSNVNDLLTRVIAEVREQLGKTGIAGSREIRHLGWLAEKVP GESKKQWKPALVVLTEKDLLIYDSMPRRKEAWFSPVHTYPLLATRLVHSGPGKGSPQA GVDLSFATRTGTRQGIETHLFRAETSRDLSHWTRSIVQGCHNSAELIAEISTACTYKN QECRLTIHYENGFSITTEPQEGAFPKTIIQSPYEKLKMSSDDGIRMLYLDFGGKDGEI QLDLHSCPKPIVFIIHSFLSAKITRLGLVA" BASE COUNT 741 a 727 c 733 g 626 t ORIGIN 1 cctgagtgca gctgccaact cccgccgagt gcgtctgcga actcccggag cggagtcccg 61 cgtgccgcca cctccccgcg ggacgcactc tcctcgctcc cccgggcccc gcgtcctccc 121 cccggccacc cttccccact tttcccccct tttccaatca catggcattt taagaatgcc 181 ggaaagatgg cggtagcggc ggcggcggcg gcggctgggc cggctggcgc gggaggcggc 241 cgggcgcagc ggagcgggct gctggaagtt ttggtgcggg atcgctggca caaagttctg 301 gtgaacttga gcgaggacgc cctggttctg agcagcgagg agggcgctgc ggcgtacaac 361 ggcatcggga ccgccaccaa tggctcgttc tgcaggggcg ccggggctgg gcacccgggc 421 gcgggcggcg cgcagccccc ggactcgccc gccggggtcc gcaccgcttt caccgacctg 481 cccgagcagg tgcccgagtc catctcgaac cagaagcgtg gcgtgaaggt gctgaagcag 541 gagctgggcg ggctggggat cagcatcaag gggggcaagg agaacaagat gcccatcctc 601 atcagcaaga tcttcaaggg gctggcggcg gaccagaccc aagccctgta cgtgggcgac 661 gccatcctgt ccgtgaacgg agccgacctg cgggacgcca cccacgacga ggcggtgcag 721 gcgttgaagc gcgcgggcaa ggaagtgctg ctggaagtga agtacatgcg agaagccacg 781 ccctatgtga agaaaggatc cccagtatcc gagattgggt gggaaacacc tccgcctgaa 841 tcccctcggt tagggggcag cacctcagac cccccgtcat cgcagtcctt ctccttccac 901 agagaccgga aaagcatccc cctcaaaatg tgctacgtca ctcggagtat ggccttggcc 961 gaccctgaga acaggcagct tgaaatccac tctccagatg ctaagcacac ggtgatccta 1021 aggagcaagg actcagccac ggcccaggca tggttcagtg ccatccattc caacgttaat 1081 gacctgctga cccgagtgat tgctgaggtc agagagcagc tggggaaaac aggcattgct 1141 gggagccgag agattaggca tcttggctgg cttgcagaaa aggtgccagg ggagagcaag 1201 aaacagtgga aaccagccct ggttgtgctg actgagaaag accttttaat ctatgacagc 1261 atgccacgga ggaaggaagc ctggttcagc ccagttcaca cataccctct tcttgccacc 1321 aggctggtcc attcaggtcc aggaaaggga tcaccccagg ctggtgtgga tctgtccttt 1381 gcaacgcgaa ctggtaccag gcaagggatt gaaacacatc tcttcagagc agagaccagc 1441 agggacctct cccactggac aaggagcata gtacagggtt gccacaattc tgctgaactc 1501 attgctgaaa tcagcactgc ttgcacctac aaaaaccagg agtgccgttt gaccatacat 1561 tatgagaatg gattttctat taccactgaa ccacaggagg gtgcctttcc caagaccatc 1621 atacagtctc cttatgaaaa gctcaaaatg tcttcagatg atggaatcag gatgctgtat 1681 ttagattttg gaggcaaaga tggagagatt caactggacc ttcattcctg ccccaagcca 1741 attgttttca tcattcattc cttcctgtca gctaagatta caagactggg cttggtggcc 1801 tgaagacagg ggtgacttgc ctttgagaaa agaagggctg caatgccacc agagaacgtg 1861 atgtcagaca ccatctgtag tgagcagcgc accagatgta gcgtgctaca gtcagcttta 1921 gctctcaaga gtcgtatgta actgtcccag actcctctgt cagtttcagc aactacaagg 1981 gataccctgc gaaagtacca tgagaaatat cagagtaaaa ctttctagaa cagtacaagg 2041 ttaaagaggt gaggtgacgg gaaatacaca gcatagcttt gaaataatga caaccaagga 2101 catgaccatt agaacagcat gtgcagatct taatcatccc agttcctagg caacttgttc 2161 accaggtacg caagggccga atagttgaga aatggacatt cttacctact cctcctagcc 2221 ccctatcccc agtaacagtg atcccttttc ttattgtgat ttatttccta attcttgctg 2281 agttgacttt cccttgtagg aaaagaaaaa tatttcaaat agaaacccac cttttattta 2341 agtatgaagc agctgttact ttttaaaaaa tgaattatct ttcaatggtg tagaatgatt 2401 ccaaagtgtc tccattagca tatactgagc aggaattaaa taaagcatca gatactgatc 2461 tgagctgtaa gctggtagaa tctgagccaa agtagactgc ttaaattgat aagctttgct 2521 aaagagttgt atgcacaaag gatgattaat tctgggacta tactcacacc aaggtctgct 2581 gtcttatagc caagaattac agctttattt atagagagtg aattatgggt attttttcag 2641 aaaatattgt catctgatat acacataaaa caactcacat tgttggagtt aactaattat 2701 ccccatttca tggttttcag tggcaactta ctgacccttg tttttgcctg tgcttgtatg 2761 catgcatttt caagcaagta ataaagcagc ctcatttaat tctggaaaaa aaaaaaaaaa 2821 aaaaaaa //