LOCUS BC098573 2827 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens syntrophin, beta 1 (dystrophin-associated protein A1,
59kDa, basic component 1), mRNA (cDNA clone MGC:111389
IMAGE:30925462), complete cds.
ACCESSION BC098573
VERSION BC098573.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2827)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2827)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mary Hendrix
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 222 Row: c Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860908.
FEATURES Location/Qualifiers
source 1..2827
/db_xref="H-InvDB:HIT000336024"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:111389 IMAGE:30925462"
/tissue_type="Chondrosarcoma Lung Metastasis"
/clone_lib="NIH_MGC_212"
/lab_host="DH10B"
/note="Vector: pYX-ASC"
gene 1..2827
/gene="SNTB1"
/gene_synonym="59-DAP"
/gene_synonym="A1B"
/gene_synonym="BSYN2"
/gene_synonym="DAPA1B"
/gene_synonym="FLJ22442"
/gene_synonym="SNT2"
/gene_synonym="TIP-43"
/db_xref="GeneID:6641"
/db_xref="HGNC:HGNC:11168"
/db_xref="MIM:600026"
CDS 187..1803
/gene="SNTB1"
/gene_synonym="59-DAP"
/gene_synonym="A1B"
/gene_synonym="BSYN2"
/gene_synonym="DAPA1B"
/gene_synonym="FLJ22442"
/gene_synonym="SNT2"
/gene_synonym="TIP-43"
/codon_start=1
/product="syntrophin, beta 1 (dystrophin-associated
protein A1, 59kDa, basic component 1)"
/protein_id="AAH98573.1"
/db_xref="GeneID:6641"
/db_xref="HGNC:HGNC:11168"
/db_xref="MIM:600026"
/translation="MAVAAAAAAAGPAGAGGGRAQRSGLLEVLVRDRWHKVLVNLSED
ALVLSSEEGAAAYNGIGTATNGSFCRGAGAGHPGAGGAQPPDSPAGVRTAFTDLPEQV
PESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAI
LSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGWETPPPE
SPRLGGSTSDPPSSQSFSFHRDRKSIPLKMCYVTRSMALADPENRQLEIHSPDAKHTV
ILRSKDSATAQAWFSAIHSNVNDLLTRVIAEVREQLGKTGIAGSREIRHLGWLAEKVP
GESKKQWKPALVVLTEKDLLIYDSMPRRKEAWFSPVHTYPLLATRLVHSGPGKGSPQA
GVDLSFATRTGTRQGIETHLFRAETSRDLSHWTRSIVQGCHNSAELIAEISTACTYKN
QECRLTIHYENGFSITTEPQEGAFPKTIIQSPYEKLKMSSDDGIRMLYLDFGGKDGEI
QLDLHSCPKPIVFIIHSFLSAKITRLGLVA"
BASE COUNT 741 a 727 c 733 g 626 t
ORIGIN
1 cctgagtgca gctgccaact cccgccgagt gcgtctgcga actcccggag cggagtcccg
61 cgtgccgcca cctccccgcg ggacgcactc tcctcgctcc cccgggcccc gcgtcctccc
121 cccggccacc cttccccact tttcccccct tttccaatca catggcattt taagaatgcc
181 ggaaagatgg cggtagcggc ggcggcggcg gcggctgggc cggctggcgc gggaggcggc
241 cgggcgcagc ggagcgggct gctggaagtt ttggtgcggg atcgctggca caaagttctg
301 gtgaacttga gcgaggacgc cctggttctg agcagcgagg agggcgctgc ggcgtacaac
361 ggcatcggga ccgccaccaa tggctcgttc tgcaggggcg ccggggctgg gcacccgggc
421 gcgggcggcg cgcagccccc ggactcgccc gccggggtcc gcaccgcttt caccgacctg
481 cccgagcagg tgcccgagtc catctcgaac cagaagcgtg gcgtgaaggt gctgaagcag
541 gagctgggcg ggctggggat cagcatcaag gggggcaagg agaacaagat gcccatcctc
601 atcagcaaga tcttcaaggg gctggcggcg gaccagaccc aagccctgta cgtgggcgac
661 gccatcctgt ccgtgaacgg agccgacctg cgggacgcca cccacgacga ggcggtgcag
721 gcgttgaagc gcgcgggcaa ggaagtgctg ctggaagtga agtacatgcg agaagccacg
781 ccctatgtga agaaaggatc cccagtatcc gagattgggt gggaaacacc tccgcctgaa
841 tcccctcggt tagggggcag cacctcagac cccccgtcat cgcagtcctt ctccttccac
901 agagaccgga aaagcatccc cctcaaaatg tgctacgtca ctcggagtat ggccttggcc
961 gaccctgaga acaggcagct tgaaatccac tctccagatg ctaagcacac ggtgatccta
1021 aggagcaagg actcagccac ggcccaggca tggttcagtg ccatccattc caacgttaat
1081 gacctgctga cccgagtgat tgctgaggtc agagagcagc tggggaaaac aggcattgct
1141 gggagccgag agattaggca tcttggctgg cttgcagaaa aggtgccagg ggagagcaag
1201 aaacagtgga aaccagccct ggttgtgctg actgagaaag accttttaat ctatgacagc
1261 atgccacgga ggaaggaagc ctggttcagc ccagttcaca cataccctct tcttgccacc
1321 aggctggtcc attcaggtcc aggaaaggga tcaccccagg ctggtgtgga tctgtccttt
1381 gcaacgcgaa ctggtaccag gcaagggatt gaaacacatc tcttcagagc agagaccagc
1441 agggacctct cccactggac aaggagcata gtacagggtt gccacaattc tgctgaactc
1501 attgctgaaa tcagcactgc ttgcacctac aaaaaccagg agtgccgttt gaccatacat
1561 tatgagaatg gattttctat taccactgaa ccacaggagg gtgcctttcc caagaccatc
1621 atacagtctc cttatgaaaa gctcaaaatg tcttcagatg atggaatcag gatgctgtat
1681 ttagattttg gaggcaaaga tggagagatt caactggacc ttcattcctg ccccaagcca
1741 attgttttca tcattcattc cttcctgtca gctaagatta caagactggg cttggtggcc
1801 tgaagacagg ggtgacttgc ctttgagaaa agaagggctg caatgccacc agagaacgtg
1861 atgtcagaca ccatctgtag tgagcagcgc accagatgta gcgtgctaca gtcagcttta
1921 gctctcaaga gtcgtatgta actgtcccag actcctctgt cagtttcagc aactacaagg
1981 gataccctgc gaaagtacca tgagaaatat cagagtaaaa ctttctagaa cagtacaagg
2041 ttaaagaggt gaggtgacgg gaaatacaca gcatagcttt gaaataatga caaccaagga
2101 catgaccatt agaacagcat gtgcagatct taatcatccc agttcctagg caacttgttc
2161 accaggtacg caagggccga atagttgaga aatggacatt cttacctact cctcctagcc
2221 ccctatcccc agtaacagtg atcccttttc ttattgtgat ttatttccta attcttgctg
2281 agttgacttt cccttgtagg aaaagaaaaa tatttcaaat agaaacccac cttttattta
2341 agtatgaagc agctgttact ttttaaaaaa tgaattatct ttcaatggtg tagaatgatt
2401 ccaaagtgtc tccattagca tatactgagc aggaattaaa taaagcatca gatactgatc
2461 tgagctgtaa gctggtagaa tctgagccaa agtagactgc ttaaattgat aagctttgct
2521 aaagagttgt atgcacaaag gatgattaat tctgggacta tactcacacc aaggtctgct
2581 gtcttatagc caagaattac agctttattt atagagagtg aattatgggt attttttcag
2641 aaaatattgt catctgatat acacataaaa caactcacat tgttggagtt aactaattat
2701 ccccatttca tggttttcag tggcaactta ctgacccttg tttttgcctg tgcttgtatg
2761 catgcatttt caagcaagta ataaagcagc ctcatttaat tctggaaaaa aaaaaaaaaa
2821 aaaaaaa
//