LOCUS BC098454 3282 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:6429542), partial cds.
ACCESSION BC098454
VERSION BC098454.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3282)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3282)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 62 Row: f Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3282
/db_xref="H-InvDB:HIT000336008"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6429542"
/tissue_type="Lung, epidermoid carcinoma"
/clone_lib="NIH_MGC_101"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene <1..3282
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..1612
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=2
/product="SEC16A protein"
/protein_id="AAH98454.1"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="LISQLVQMASQLRLFDPQLKEKPEEESLAAPTWLVHLQQVERQI
KEGAGVWHQDGALPQQCPGTPSSEMEQLDRPGLSQPGALGIANPLLAVPAPSPEHSSP
SVRLLPSAPQTLPDGPLASPARVPMFPVPLPPGPLEPGPGCVTPGPALGFLEPSGPGL
PPGVPPLQERRHLLQEARSPDPGIVPQEAPVGNSLSELSEENFDGKFANLTPSRTVPD
SEAPPGWDRADSGPTQPPLSLSPAPETKRPGQAAKKETKEPKKGESWFFRWLPGKKKT
EAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPPTSMPKTVQAAPPALPGPPGA
PVNMYSRRAAGTRARYVDVLNPSGTQRSEPALAPADFVAPLAPLPIPSNLFVPTPVSS
VRPQGRSGRNDGLLALSSPDAEEPQLPDGTGREGPAAARGLANPEPAPEPKVLSSAAS
LPGSELPSSRPEGSQGGELSRCSSMSSLSREVSQHFNQAPGDLPAAGGPPSGAMPFYN
PAQLAQACATSGSSRLGRIGQRKHLVLN"
BASE COUNT 728 a 925 c 876 g 753 t
ORIGIN
1 gttgatcagc cagcttgtgc agatggcttc ccagttacga ctcttcgatc cccagctgaa
61 agagaagcca gaagaggagt ccttggccgc acccacgtgg ctggttcacc tgcagcaggt
121 ggagcggcag attaaggagg gggctggagt atggcatcag gatggagccc tcccgcagca
181 gtgtcctggc actccgagtt ccgagatgga gcagttggac aggccaggac tcagtcagcc
241 aggagccctg gggatcgcca accctctgct ggcggtgcct gcaccgagcc ctgagcactc
301 gagcccgagc gtgcggctgc tgccctcagc tccgcagacg ctccctgacg gcccattggc
361 cagtcctgcc agagtgccga tgttcccagt gccactgccc ccggggcccc tggagccggg
421 tcctggctgt gtgaccccag ggcctgcact tggcttcctg gagccctccg ggcctggcct
481 cccacctggt gtgccacctc tgcaggaaag gagacacttg ctccaggaag ccaggagccc
541 agacccaggg atagtgccgc aggaggcgcc tgttggaaac tcactttccg agctaagcga
601 agaaaatttt gatggaaaat ttgctaatct gaccccctcg aggacggtgc cagactcgga
661 ggccccccca gggtgggatc gtgccgactc gggtcccacg cagccacctc tgtctctctc
721 acccgctccc gaaacaaaga gacccggaca ggcagccaag aaagaaacga aggaacctaa
781 gaagggtgaa tcctggttct ttcgttggct acctggaaag aaaaagacag aagcttattt
841 gccagatgac aagaacaaat cgattgtttg ggatgaaaag aaaaaccagt gggtgaattt
901 aaatgagcca gaagaggaga agaaagcccc gcccccacct ccaacctcga tgcccaagac
961 tgtgcaagct gccccgcctg ccctcccagg gcctcctgga gcccccgtga acatgtactc
1021 tagaagagca gcaggaacca gagctcgcta cgttgacgtc ctgaacccaa gcgggaccca
1081 gcggagcgag ccggctctcg ctcctgcgga ctttgtcgct ccactcgcgc cactcccaat
1141 tccttctaac ttgttcgtgc caaccccagt gtcttcagtg agaccccagg gacgttcggg
1201 acggaatgat ggcctcctcg ctctctcatc cccagatgca gaagaaccac agcttccaga
1261 cgggactggc agggaagggc ctgcagcagc taggggcctg gccaatccag agcctgcccc
1321 agagcccaag gttttaagct ctgcagcgtc actccctggc tctgaactcc cctcctccag
1381 gcctgagggt tcccagggag gagagctttc gcgctgtagt tcaatgagtt cattatcacg
1441 tgaagtgagc cagcatttta atcaggctcc tggcgacctc cctgctgcag ggggccctcc
1501 cagcggggcc atgcccttct acaaccctgc tcagctggca caggcctgcg ccacctccgg
1561 gagctcaagg ctagggagga ttggccagag gaagcacctg gtgctgaact aggcttgccc
1621 tgctgtgaac ttgcacttgg agccctgacg ctgctgttct ccccgaagaa cccgaccgac
1681 ctccgcgatc tccgtcccgc ccccagggag acacagcagt gactcagagc tggtcgcaca
1741 ctgtgcctcc ctcctcaccg cccatcgtaa tgaattattt tgaaaattaa ttccaccatc
1801 ctttcagatt ctggatggaa agactgaatc tttgactcag aattgtttgc cgaaaagaat
1861 gatgtgactt tcttagtcat ttaggatgat ttaaggatat agtattcctg gtcatttaag
1921 aatgttcatt cattgaagcc ggagctgtct ctgccacagg agagccacat ggtcggtagt
1981 aaccagggcc tctccaagcc cagctgtgag tcactgccca gtgagtcccg cgcttccttt
2041 aaggtgctgg gagcaaagag agggtgactg aggcagaccc caacccctgc tctgcaccat
2101 ctgggccctc gccgtgtttg aacctggctg aatgagtgga gggcgctgtg ttctcaatca
2161 gcgcctccga ggagccgtgg ggttccttcg gcattagttc acggtttttg agagaggcct
2221 tagttactgc agtgaatttc tttcctgttg caaagacgct tccagcctca ctttactttc
2281 tgtggcctga tgaggaccat gggtgatttt gtgtacccaa agcgctgggg actgcccacc
2341 gtgtggccca gtcactggga aggagcccca gagagccggc tgtctgacat gatggctcag
2401 ggtggtcatc caggttgaaa actgaccgtg tgatgtttga tttgggcttc atttcgtgtg
2461 taggagcacg gttagactca ctgttaagga agctggatgc acttctctaa aaggctgcac
2521 tttccgtgag cacttttcgt ggtacaatcc acatgaccca ctttctcccc tgggggacgt
2581 tggttcagag gttggtagca cttggggaga gtatcttaac acagtttctt gacagcagct
2641 ctggaactta gtatttctgc cccgagtttt gccacactga gactttgagt agctcctggt
2701 ggactcaacc ctgttcaact cagagacggg cctcctctca ctgatgcaaa gctttaaggc
2761 ttctctgact gttctgaaac tcttcgtatt cttgtcaagt ctaaagagac tgaagaaaag
2821 atttaaatac taataaaaat cagtagataa tttctgtagg ttctgctgga ggaatacaaa
2881 ctgtttggtg ttttaaattt aagtgtagaa attgtagaat gtggaattag cacagatcct
2941 tcctggcttt ctgtttcact tgatcattta gcccagacca cccaggatgt tttccaaaat
3001 gttccacagg cgtgtcccgc tggatccatt tgtccttgtc acttggagaa aggccagtcc
3061 ctgtgacggg gcagccctct ctgtccctcg gtcagctcgt gtgaatcctg ggacctcttc
3121 cggtcggctc tgcccgctgt tctggggtcg actgccacga cttttgattc aagaagcttc
3181 ctccaggcgg gagcggctat ttttcctaaa tgagaattgt tacattgcaa attgttgaat
3241 aaaatatttt gcgctccttc aagcaaaaaa aaaaaaaaaa aa
//