LOCUS BC098398 5076 bp mRNA linear HUM 14-SEP-2006
DEFINITION Homo sapiens non-SMC condensin II complex, subunit D3, mRNA (cDNA
clone MGC:104671 IMAGE:30528692), complete cds.
ACCESSION BC098398
VERSION BC098398.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5076)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5076)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: o Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45356150.
FEATURES Location/Qualifiers
source 1..5076
/db_xref="H-InvDB:HIT000335952"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104671 IMAGE:30528692"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5076
/gene="NCAPD3"
/gene_synonym="CAP-D3"
/gene_synonym="FLJ42888"
/gene_synonym="hCAP-D3"
/gene_synonym="hHCP-6"
/gene_synonym="KIAA0056"
/db_xref="GeneID:23310"
/db_xref="HGNC:HGNC:28952"
/db_xref="MIM:609276"
CDS 66..4562
/gene="NCAPD3"
/gene_synonym="CAP-D3"
/gene_synonym="FLJ42888"
/gene_synonym="hCAP-D3"
/gene_synonym="hHCP-6"
/gene_synonym="KIAA0056"
/codon_start=1
/product="non-SMC condensin II complex, subunit D3"
/protein_id="AAH98398.1"
/db_xref="GeneID:23310"
/db_xref="HGNC:HGNC:28952"
/db_xref="MIM:609276"
/translation="MVALRGLGSGLQPWCPLDLRLEWVDTVWELDFTETEPLDPSIEA
EIIETGLAAFTKLYESLLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHK
KNVSVQYREYGLHAAGLYFLLLEVPGSVANQVFHPVMFDKCIQTLKKSWPQESNLNRK
RKKEQPKSSQANPGRHRKRGKPPRREDIEMDEIIEEQEDENICFSARDLSQIRNAIFH
LLKNFLRLLPKFSLKEKPQCVQNCIEVFVSLTNFEPVLHECHVTQARALNQAKYIPEL
AYYGLYLLCSPIHGEGDKVISCVFHQMLSVILMLEVGEGSHRAPLAVTSQVINCRNQA
VQFISALVDELKESIFPVVRILLQHICAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAM
FIAWLYKYSRSSKIPHRVFTLDVVLALLELPEREVDNTLSLEHQKFLKHKFLVQEIMF
DRCLDKAPTVRSKALSSFAHCLELTVTSASESILELLINSPTFSVIESHPGTLLRNSS
AFSYQRQTSNRSEPSGEINIDSSGETVGSGERCVMAMLRRRIRDEKTNVRKSALQVLV
SILKHCDVSGMKEDLWILQDQCRDPAVSVRKQALQSLTELLMAQPRCVQIQKAWLRGV
VPVVMDCESTVQEKALEFLDQLLLQNIRHHSHFHSGDDSQVLAWALLTLLTTESQELS
RYLNKAFHIWSKKEKFSPTFINNVISHTGTEHSAPAWMLLSKIAGSSPRLDYSRIIQS
WEKISSQQNPNSNTLGHILCVIGHIAKHLPKSTRDKVTDAVKCKLNGFQWSLEVISSA
VDALQRLCRASAETPAEEQELLTQVCGDVLSTCEHRLSNIVLKENGTGNMDEDLLVKY
IFTLGDIAQLCPARVEKRIFLLIQSVLASSADADHSPSSQGSSEAPASQPPPQVRGSV
MPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRY
TIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFRFVSTLIDSHP
DIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEKHEKYNKFPQSEREKRLFSLK
GKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPLDLDASELLSDTF
EVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIENIIPI
IISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQEQ
LVQEQELAKHADVAGTAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRA
SAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPF
TLNSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPR
TPSSAKEKIEGRSQGNDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRRSLRKTPL
KTAN"
BASE COUNT 1383 a 1185 c 1225 g 1283 t
ORIGIN
1 ggcgcgcgcg cgggagcgag ctttgaaagt tgagcacggc ggcggcgagc cggtgccctg
61 ggatcatggt ggcgttgcgg ggccttggta gcggcctgca gccctggtgt ccgctggatc
121 ttagactcga atgggttgac acagtgtggg aactggattt cacagagact gagcctttgg
181 atcccagcat agaagcagag atcatagaga ctggattggc tgcattcaca aaactctatg
241 aaagcctttt accctttgct actggagaac atggatctat ggagagtatc tggaccttct
301 tcattgagaa caatgtttcc catagtacac tggtggcatt gttctatcat tttgttcaaa
361 tagttcataa gaagaatgtc agtgtacagt atcgagaata tggccttcat gccgctgggc
421 tttacttttt gctactagaa gtaccaggca gtgtagccaa tcaagtattc cacccagtga
481 tgtttgacaa atgcattcag actctaaaga agagctggcc ccaggaatct aacttgaatc
541 ggaaaagaaa gaaagaacag cctaagagct ctcaggctaa ccccgggagg catagaaaaa
601 ggggaaagcc acccaggaga gaagatattg agatggatga aattatagaa gaacaagaag
661 atgagaatat ttgtttttct gcccgggacc tttctcaaat tcgaaatgcc atctttcacc
721 ttttaaagaa ttttttaagg cttctgccaa agttttcctt gaaagaaaag ccacaatgtg
781 tacagaattg tatagaggtc tttgtttcat taactaattt tgagccagtt cttcatgaat
841 gtcatgttac acaagccaga gctcttaacc aagcaaaata cataccagaa ctggcttatt
901 atggattgta tttgctgtgc tctcccattc atggagaagg agataaggtc atcagttgtg
961 ttttccatca aatgctcagt gtaatattaa tgttagaagt tggtgaagga tcccatcgtg
1021 ccccccttgc tgttacctcc caagtcatca actgtagaaa ccaggcggtc cagtttatca
1081 gcgcccttgt ggatgaatta aaggagagta tattcccagt cgtccgtatc ttactgcagc
1141 acatctgtgc caaggtggta gataaatcag agtatcgtac ttttgcagcc cagtccctag
1201 tccagctgct cagtaaactt ccttgtgggg aatacgctat gttcattgcc tggctttaca
1261 aatactcccg aagttccaag atcccacacc gggtttttac tcttgatgtt gtcttagctc
1321 tgttagaact gcctgaaaga gaggtggata acaccctctc cttggagcat cagaagttct
1381 taaagcataa gttcctggtg caggaaatta tgtttgatcg ttgcttagac aaggcgccta
1441 ctgtccgcag caaggcactg tccagctttg cacactgtct ggagttgact gttaccagtg
1501 cgtcggagag tatcctggag ctcctgatta acagtcctac gttttctgta atagagagtc
1561 accctggtac cttactgaga aattcatcag ctttttccta ccaaaggcag acatctaacc
1621 gttccgaacc ctcaggggag atcaacatag acagcagtgg tgaaacagtt ggatctggag
1681 aaagatgtgt catggcaatg ctgagaagga ggatcaggga tgagaagacc aacgttagga
1741 agtctgcact gcaggtatta gtgagtattt tgaaacactg tgatgtctca ggcatgaagg
1801 aagacctgtg gattctgcag gaccagtgtc gggaccctgc agtgtctgtc cggaagcagg
1861 ccctccagtc tcttactgaa ctccttatgg ctcagcctag atgcgtgcag atccagaaag
1921 cctggttgcg gggggtggtc ccggtggtga tggactgcga gagcactgtg caggagaagg
1981 ccctggagtt cctggaccag ctgctgctgc agaacatccg gcatcacagt cattttcact
2041 ctggggacga cagccaggtc ctcgcctggg cgcttcttac tctcctcacc accgaaagcc
2101 aggaactgag ccgatattta aataaggctt ttcatatctg gtccaagaaa gaaaaattct
2161 cacccacttt tataaacaat gtaatatctc acactggcac ggaacattcg gcacctgcct
2221 ggatgctgct ctccaagatt gctggctcct cacccaggct ggactacagc agaataatac
2281 aatcttggga gaaaatcagc agtcagcaga atcccaattc aaacacctta ggacatattc
2341 tctgtgtgat tgggcatatt gcaaagcatc ttcctaagag cacccgggac aaagtgactg
2401 atgctgtcaa gtgtaagctg aatggatttc agtggtctct agaggtgatc agttcagctg
2461 ttgacgcctt gcagaggctt tgtagagcat ctgcagagac accagcagag gagcaggaat
2521 tgctgacgca ggtgtgtggg gatgtactct ccacctgcga gcaccgcctc tccaacatcg
2581 ttctcaagga gaatggaaca gggaatatgg acgaagacct gttggtgaag tacattttta
2641 ccttagggga tatagcccag ctgtgtccag ccagggtgga gaagcgcatc ttccttctga
2701 ttcagtccgt cctggcttcg tctgctgatg ctgaccactc accatcatct caaggcagca
2761 gtgaggcccc agcgtctcag ccaccccccc aggtcagagg ttctgtcatg ccctctgtga
2821 ttagagcaca tgccatcatt accttaggta agctgtgctt acagcacgag gatctggcaa
2881 agaagagcat cccagccctg gtgcgagagc tcgaggtgtg tgaggacgtg gctgtccgca
2941 acaacgtcat cattgtgatg tgcgatctct gcattcgcta caccatcatg gtggacaagt
3001 atattcccaa catctccatg tgtctgaagg attccgaccc attcatccgg aagcagacac
3061 tcatcttgct taccaatctc ttgcaggagg aatttgtgaa atggaagggc tccctgttct
3121 tccgatttgt cagcactctg atcgattcac acccagacat tgccagcttc ggggagtttt
3181 gcctggctca cctgttactg aagaggaacc ctgtcatgtt cttccaacac ttcattgaat
3241 gtatttttca ctttaataac tatgagaagc atgagaagta caacaagttc ccccagtcag
3301 agagagagaa gcggctgttt tcattgaagg gaaagtcaaa caaagagaga cgaatgaaaa
3361 tctacaaatt tcttctagag cacttcacag atgaacagcg attcaacatc acttccaaaa
3421 tctgccttag tattttggcg tgctttgctg atggcatcct acccctggac ctggacgcca
3481 gtgagttact ctcagacacg tttgaggtcc tcagctcaaa ggagatcaag cttttggcaa
3541 tgagatctaa accagacaaa gacctcctta tggaagaaga tgacatggcc ttggcaaatg
3601 tagtcatgca ggaagctcag aagaagctca tctcacaagt tcagaagagg aatttcatag
3661 aaaatattat tccaattatc atctccctga agactgtgct ggagaaaaat aagatcccag
3721 ctttgcggga actcatgcac tatctcaggg aggtgatgca ggattaccga gatgagctca
3781 aggacttctt tgcagttgac aaacagctgg catcagagct tgagtatgac atgaagaagt
3841 accaggaaca gctggtccag gagcaggagc tagcaaaaca tgcagatgtg gccgggacgg
3901 ctggaggtgc tgaggtggca cctgtggcac aggttgccct gtgtttagaa acagtgccag
3961 ttcctgctgg ccaagaaaac cctgccatgt cacctgccgt gagccagccc tgcacaccca
4021 gggcaagtgc tggccatgta gcagtatcat ctcctacacc tgaaacaggg ccattgcaga
4081 ggttgctgcc caaagccagg cccatgtccc tgagcaccat tgcaatcctg aattctgtca
4141 agaaagccgt ggagtcaaag agcaggcatc ggagtcggag cttaggagtg ctgcctttca
4201 ctttaaattc tggaagccca gaaaaaacgt gcagtcaggt gtcttcatac agtttggagc
4261 aagagtcgaa tggcgagatt gagcacgtga ccaagcgggc catcagcacc cccgagaaga
4321 gcatcagtga tgtcacgttt ggagcagggg tcagttacat cgggacacca cggactccgt
4381 cgtcagccaa agagaaaatt gaaggccgga gtcaaggaaa tgacatctta tgtttatcac
4441 tgcctgataa accgccccca cagcctcagc agtggaatgt gcggtctccc gccaggaata
4501 aagacactcc agcctgcagc aggaggtccc tccgaaagac ccctctgaaa acagccaact
4561 aaacagcgcc tcccaccagt gtccaggcag gcaggagccc ttgaggaagc agtctcgtgt
4621 cctccgtgtg aaggcagctg gatcacttcc cgcagtcctt gggcagcgct ttgctgtgga
4681 acacgagagc tcctcctcag gggcctggca ctcaccttct attctgtatg atgtatttgg
4741 ttaaacactg tcaaataata gagatgtgcc agatttagat tttcttaccc taatctgttt
4801 aatattgtaa ctttattcca tttgaaagtg tcaagcccat tcagataagc tataatctgg
4861 tctttaagga acacaacttt aaaactgcag ctttctttta tataaatcaa gcctctgtta
4921 acttgaattc cttatagtac atattttccc atctgtaatg acgaaatttt gattctaata
4981 ttttttctat tatttataag tgcaaatttt tttaaaaagt gtacagcttt ctaaaagtaa
5041 taaaggttta gcataaatac aaaaaaaaaa aaaaaa
//