LOCUS BC098386 3747 bp mRNA linear HUM 18-JAN-2007
DEFINITION Homo sapiens vacuolar protein sorting 26 homolog B (S. pombe), mRNA
(cDNA clone MGC:104580 IMAGE:30527559), complete cds.
ACCESSION BC098386
VERSION BC098386.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3747)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3747)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147470.
FEATURES Location/Qualifiers
source 1..3747
/db_xref="H-InvDB:HIT000335940"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104580 IMAGE:30527559"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3747
/gene="VPS26B"
/gene_synonym="Pep8b"
/db_xref="GeneID:112936"
/db_xref="HGNC:HGNC:28119"
/db_xref="MIM:610027"
CDS 520..1530
/gene="VPS26B"
/gene_synonym="Pep8b"
/codon_start=1
/product="vacuolar protein sorting 26 homolog B (S.
pombe)"
/protein_id="AAH98386.1"
/db_xref="GeneID:112936"
/db_xref="HGNC:HGNC:28119"
/db_xref="MIM:610027"
/translation="MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGE
TVSGKVSLALRNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQS
QAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNS
SIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG
PNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVL
IDEEERRYFKQQEVVLWRKGDIVRKSMSHQAAIASQRFEGTTSLGEVRTPSQLSDNNC
RQ"
BASE COUNT 802 a 1072 c 1042 g 831 t
ORIGIN
1 agggtgcgcc tgcgcgccgc tgctccagcg catccgggct ggagctcgcc cgccccctcc
61 cccgcccgga gccgccgaag cgcctcggtg cgttgcaccg ccggaggctg ggcagctcgc
121 agcgctgctc ggcgctggac cccacccggc aggcgcaggc cacccacacc cggctctgtg
181 cggctgcccc ccgcagcatt gcacggccgg ccctcgcccg cccactgcca ccggccgcgg
241 gactggctgg gactggctcg gccgagggca ctgctcctcg gtgcattgct gctcgggcgc
301 cgcagcccgc agccgccagc ctcccccggc cgtgcccctc ccccgtggag ccggctgtcc
361 gtcggcgccc actgcccggc ggcagcggcg gagccaggca gccccgcggc ggccgagcgc
421 gctcgcgcat cgggccctct ggccttcttt acctagggca gcccgcgccc cggtgcgagg
481 gagcggtcct taccgagacc cgcccggccc ggcggtgcga tgagcttctt cggcttcggg
541 cagagcgtgg aggtggaaat ccttctgaac gatgcagaga gtaggaagcg ggccgagcac
601 aagacggagg acgggaagaa ggagaaatat ttcctcttct acgacgggga gacggtctcc
661 gggaaggtga gccttgccct caggaacccc aacaagcggc tggagcacca gggcatcaag
721 atcgagttca tcgggcagat cgaactctac tacgatcgcg ggaaccacca tgagtttgtg
781 tccctggtga aggacctggc ccggcctgga gagatcaccc agtcgcaggc cttcgacttt
841 gagtttaccc acgtggagaa gccgtatgag tcctacacag ggcagaatgt gaagctacgc
901 tatttccttc gtgctaccat cagccgccgc ctcaatgatg ttgtcaaaga gatggacatt
961 gtagttcaca cactcagcac atacccagag ctgaactctt ccatcaagat ggaggttggg
1021 attgaggact gtctgcacat tgaatttgag tacaataaat ccaaatacca cttgaaagat
1081 gtcattgtag ggaagatata cttcctgctg gtgagaatca aaatcaagca catggagata
1141 gacatcatca agcgagaaac gacgggtaca ggccccaacg tgtaccatga gaatgacacg
1201 atagccaagt acgagatcat ggacggggca ccagtgcgag gagagtccat cccgatccgg
1261 ctcttcctgg ccgggtatga gctcacgccc accatgcggg acatcaacaa gaagttctct
1321 gtgcgctatt acctcaacct ggtgctgata gacgaggagg agcggcgcta cttcaagcag
1381 caggaagtgg tgttgtggcg gaagggtgac atcgtacgga agagcatgtc ccaccaggcg
1441 gccatcgcct cacagcgctt tgagggcacc acctccctgg gtgaggtgcg gacccccagc
1501 cagctgtctg acaacaactg caggcagtag gcccccaggg ccgagaagat gctgggcacc
1561 cacccagcac ccccatctac caacaccagc ggctgggggc gggggcggac cttgtgaggc
1621 tcagttgacc cgttacttgc aacctgaaaa caaatcatgt ttttgactta aattcttttc
1681 tctggagaac ccaaggggct tggggtggga agcagtctct ccttgggatt ctgcggccga
1741 tgtgggatag aagaggtagc atcctggaag ccagcctctc tggggaacat gagccccctt
1801 cctcgggggg ctgccttgcg tcttagagga gggagagcag agagcacgca tccttggctc
1861 ctggctctct gagcttcctg atacaggatc tgagcatgtc cctgggattc tgagctgcca
1921 acagggccct gggtagtcac atcttgtact cccctttgct gtcccggagg tagtggcagg
1981 agttgggcca gcccccacta agtggcaggg gaagactcac gattgggaag ctacctcttt
2041 gggaatcttg gatgtggtga tctcaagttc ccacaggcca cctccttctg gccactcact
2101 gctgggaccc aggcacctcc cttctccatc ctctctggat tgtcagtaat gtcctggaac
2161 agaagcctgt aggatggcct tgggcacgga gaagccctgg ggtcagtgtc gtgcacggat
2221 ggcggcagtg ttgaacccag gaggctgaac ccggcccacc acggaagatg agtgcatggc
2281 aaccgcctgc cttcacgtcg ctccacttgg taaccccaag gtctgggctg ttctaggtat
2341 tgcttcacgt gccccagcaa gcccttaaca agagggcctg gttccctgaa gaaccaatcc
2401 caggaagggg ccttgatccc tccgccttgc tgagagtgaa ccctcgtctc tcctcaccct
2461 ccatttcatt tctgggaatt ggggcttagt ttcgaacctt tggcaaggct gttcttacta
2521 atgcccaagc ccctttaccc ctctccctat aggttacaca ggggagacca gggcctcggc
2581 agaagactgc tgccacactt ccgaatcatt ctgcttgcca aataggtcat cttcaccagt
2641 tgactgaccc aagtttagga ccattggtat cgtgtgttta aaaaacacat ataaaaaaac
2701 tcttgtgaat attcttgtta tgctagagag gaaggtactt ctccctctac ggctctgcgc
2761 tggggcctat ggtagtaaag gtgtttactg tcctttttct gcttcccctg gaaatgacag
2821 gcattactct cccattggcc tcccttccct ttatagaaag accaagcagg ccccactggc
2881 caagaggtac ggtatttggc agtctgagtt ctcagtaatt tggaaagtta aggagttggt
2941 tcctgtgtca cctttcagtt agtgtgggaa aggaagactt ctgttttcct gagatcagtg
3001 cagtctcagg cctttggcag ggctcatgga tcagagctga gactggaggg agaggcattt
3061 cgggtagcct aggagggcga ctggcggcag cagaaccgag gaaggcaagg ttgtttcccc
3121 cacgctgtgt cctgtgttca ggtgcgacac acaatcctca tgggaacagg atcacccatg
3181 cgctgccctt gatgatcaag gttggggctt aagtggataa gggaggcaag ttctgggttc
3241 cttgcctttt cagagcatga ggtcaggctc tgtatccctc cttttcctag ctgatattct
3301 aactagaagc atttgtcaat tcctttgcct cccaactgac aacacacgtt cattttccaa
3361 ccttcctaac atcttaaacc tttcttctgg gagaactaga agacagaatt tgctttgatt
3421 ctctcaggcg ctgtgcacaa gccaggtctt ctgttttctc tttcttactc tacccacatt
3481 cttgccttct ctatccaact gtgaaagtga ggggaggctc ctgtccccct ctcttaaggt
3541 ccccaaacct gggagtgcat aggtactaaa tcaagcagtg caacttgtaa ttaagcagct
3601 gcagtgttta catgtttctt aatgtgtcat cttttcaatg gctgtattaa aagaagaacg
3661 tttgttttaa tggtctttct gattaaagaa agcccctgtg gctttggagg cattgtgccc
3721 acggtccacc gaaaaaaaaa aaaaaaa
//