LOCUS BC098308 1348 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens solute carrier family 8 (sodium/calcium exchanger),
member 1, mRNA (cDNA clone IMAGE:40008518), complete cds.
ACCESSION BC098308
VERSION BC098308.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1348)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1348)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: h Column: 14
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1348
/db_xref="H-InvDB:HIT000335885"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40008518"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TGTTTTTC"
gene 1..1348
/gene="SLC8A1"
/db_xref="GeneID:6546"
/db_xref="HGNC:HGNC:11068"
/db_xref="IMGT/GENE-DB:11068"
/db_xref="MIM:182305"
CDS 133..1140
/gene="SLC8A1"
/codon_start=1
/product="SLC8A1 protein"
/protein_id="AAH98308.1"
/db_xref="GeneID:6546"
/db_xref="HGNC:HGNC:11068"
/db_xref="IMGT/GENE-DB:11068"
/db_xref="MIM:182305"
/translation="MSEKKALLLNELGGFTITGQPVFRKVHAREHPILSTVITIADEY
DDKQPLTSKEEEERRIAEMGRPILGEHTKLEVIIEESYEFKSTVDKLIKKTNLALVVG
TNSWREQFIEAITVSAGEDDDDDECGEEKLPSCFDYVMHFLTVFWKVLFAFVPPTEYW
NGWACFIVSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVA
ATQDQYADASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANGEQFKVSPGTLAFSVTLF
TIFAFINVGVLLYRRRPEIGGELGGPRTAKLLTSCLFVLLWLLYIFFSSLEAYCHIKG
F"
BASE COUNT 358 a 318 c 333 g 339 t
ORIGIN
1 ggacacttgt gagagctcga attccagaat gatgaaattg tcaaaacaat atcagtcaag
61 gtaattgatg atgaggagta tgagaaaaac aagaccttct tccttgagat tggagagccc
121 cgcctggtgg agatgagtga gaagaaagcc ctgttattga atgagcttgg tggcttcaca
181 ataacaggcc aacctgtctt caggaaggtt catgctagag aacatccgat tctctctact
241 gtaatcacca ttgcagacga atatgatgac aagcagccac tgaccagcaa agaggaagag
301 gagaggcgca ttgcagaaat ggggcgcccc atcctgggag agcacaccaa gttggaagtg
361 atcattgaag aatcctatga attcaagagt actgtggaca aactcattaa gaagacaaac
421 ctggcccttg tggttgggac taacagctgg agagaacagt tcattgaagc tatcactgtc
481 agtgctgggg aagatgatga cgacgatgaa tgtggggaag agaagctgcc ctcctgtttc
541 gattacgtga tgcactttct gactgtgttc tggaaggtcc tgtttgcctt cgtcccccct
601 actgaatact ggaatggctg ggcgtgtttc attgtctcca tcctcatgat tggcctactg
661 acagctttca ttggagacct ggcttcccac tttggctgca ccattggcct gaaagattct
721 gtgactgcag tcgtgttcgt cgcacttgga acatcagtgc cagacacatt tgccagcaaa
781 gtggcagcca cccaggacca gtatgcagac gcctccatag gtaacgtcac gggcagcaac
841 gcggtgaatg tcttcctggg aatcggtgtg gcctggtcca tcgctgccat ctaccacgca
901 gccaatgggg aacagttcaa agtgtcccct ggcacactag ctttctctgt cactctcttc
961 accatttttg ctttcatcaa tgtgggggtg ctgctgtatc ggcggaggcc agaaatcgga
1021 ggtgagctgg gtgggccccg gactgccaag ctcctcacat cctgcctctt tgtgctccta
1081 tggctcttgt acattttctt ctcctccctg gaggcctact gccacataaa aggcttctaa
1141 aggaactatc agatatagta aatttatata tatacatata tatacataaa aattatgtat
1201 aatggacaga ggaaactgac atttgtcatg ttcacttacc tgctgatgga atccagcttc
1261 aagagcatac tctgtactag ggccgaagta aaaaaccatc acctcccatt cccaggggca
1321 tcatcatgtt caacaaggca tggaggca
//