LOCUS BC098305 1078 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone
MGC:119305 IMAGE:40005284), complete cds.
ACCESSION BC098305
VERSION BC098305.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1078)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1078)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: d Column: 24
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1078
/db_xref="H-InvDB:HIT000335882"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119305 IMAGE:40005284"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GGAGAGCC"
gene 1..1078
/gene="SMYD2"
/gene_synonym="HSKM-B"
/gene_synonym="KMT3C"
/gene_synonym="ZMYND14"
/db_xref="GeneID:56950"
/db_xref="HGNC:HGNC:20982"
/db_xref="MIM:610663"
CDS 23..841
/gene="SMYD2"
/gene_synonym="HSKM-B"
/gene_synonym="KMT3C"
/gene_synonym="ZMYND14"
/codon_start=1
/product="SMYD2 protein"
/protein_id="AAH98305.1"
/db_xref="GeneID:56950"
/db_xref="HGNC:HGNC:20982"
/db_xref="MIM:610663"
/translation="MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLT
VNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNP
SETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFY
SKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYK
GTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDK"
BASE COUNT 298 a 252 c 275 g 253 t
ORIGIN
1 gcggccgcgc cccgccgcca ccatgagggc cgagggcctc ggcggcctgg agcgcttctg
61 cagcccgggc aaaggccggg ggctgcgggc tctgcagccc ttccaggtgg gggacttgct
121 gttctcctgc ccggcctatg cctacgtgct cacggtcaac gagcggggca accactgcga
181 gtactgcttc accaggaaag aaggattgtc caaatgtgga agatgcaagc aggcatttta
241 ctgcaatgtg gagtgtcaga aagaagattg gcccatgcac aagctggaat gttctcccat
301 ggttgttttt ggggaaaact ggaatccctc ggagactgta agactaacag caaggattct
361 ggccaaacag aaaatccacc cagagagaac accttcggaa aaattgttag ctgtgaagga
421 gtttgaatca catctggata agttagacaa tgagaagaag gatttgattc agagtgacat
481 agctgctctc catcactttt actccaagca tctcggattc cctgacaatg atagcctcgt
541 agtactcttt gcacaggtta actgtaatgg cttcacaatt gaagatgaag aactttctca
601 tttgggatca gcgatatttc ctgatgttgc attgatgaat catagctgtt gccccaatgt
661 cattgtgacc tacaaaggga ccctggcaga agtcagagct gtacaggaaa tcaagccggg
721 agaggaggtt tttaccagct atattgatct cctgtaccca acggaagata gaaatgaccg
781 gttaagagat tcttatttct ttacctgtga gtgccaggag tgtaccacca aggacaagta
841 agcactatcc tttgtactcc ctcaacgtgg cctccatgtg gttgaagcta gggagactct
901 acatgggcct ggaacacaaa gccgcagggg agaaagccct gaagaaggcc attgcaatca
961 tggaagtagc tcacggcaaa gatcatccat atatttctga gatcaaacag gaaattgaaa
1021 gccactgaaa ctatgcagca tttcagtttt catttaaaca cttagttcag aaacctta
//