LOCUS BC098285 1364 bp mRNA linear HUM 25-JUL-2005
DEFINITION Homo sapiens solute carrier family 8 (sodium/calcium exchanger),
member 1, mRNA (cDNA clone IMAGE:40008516), partial cds.
ACCESSION BC098285
VERSION BC098285.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1364)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1364)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: h Column: 13.
FEATURES Location/Qualifiers
source 1..1364
/db_xref="H-InvDB:HIT000335862"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40008516"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AAAGAAAC"
gene <1..1364
/gene="SLC8A1"
/db_xref="GeneID:6546"
/db_xref="MIM:182305"
CDS <1..1156
/gene="SLC8A1"
/codon_start=2
/product="SLC8A1 protein"
/protein_id="AAH98285.1"
/db_xref="GeneID:6546"
/db_xref="MIM:182305"
/translation="DTCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVE
MSEKKALLLNELGGFTITGKYLFGQPVFRKVHAREHPILSTVITIADEYDDKQPLTSK
EEEERRIAEMGRPILGEHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWREQFI
EAITVSAGEDDDDDECGEEKLPSCFDYVMHFLTVFWKVLFAFVPPTEYWNGWACFIVS
ILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVAATQDQYADA
SIGNVTGSNAVNVFLGIGVAWSIAAIYHAANGEQFKVSPGTLAFSVTLFTIFAFINVG
VLLYRRRPEIGGELGGPRTAKLLTSCLFVLLWLLYIFFSSLEAYCHIKGF"
BASE COUNT 363 a 320 c 337 g 344 t
ORIGIN
1 ggacacttgt ggagagctcg aattccagaa tgatgaaatt gtcaaaacaa tatcagtcaa
61 ggtaattgat gatgaggagt atgagaaaaa caagaccttc ttccttgaga ttggagagcc
121 ccgcctggtg gagatgagtg agaagaaagc cctgttattg aatgagcttg gtggcttcac
181 aataacagga aaatacctgt ttggccaacc tgtcttcagg aaggttcatg ctagagaaca
241 tccgattctc tctactgtaa tcaccattgc agacgaatat gatgacaagc agccactgac
301 cagcaaagag gaagaggaga ggcgcattgc agaaatgggg cgccccatcc tgggagagca
361 caccaagttg gaagtgatca ttgaagaatc ctatgaattc aagagtactg tggacaaact
421 cattaagaag acaaacctgg cccttgtggt tgggactaac agctggagag aacagttcat
481 tgaagctatc actgtcagtg ctggggaaga tgatgacgac gatgaatgtg gggaagagaa
541 gctgccctcc tgtttcgatt acgtgatgca ctttctgact gtgttctgga aggtcctgtt
601 tgccttcgtc ccccctactg aatactggaa tggctgggcg tgtttcattg tctccatcct
661 catgattggc ctactgacag ctttcattgg agacctggct tcccactttg gctgcaccat
721 tggcctgaaa gattctgtga ctgcagtcgt gttcgtcgca cttggaacat cagtgccaga
781 cacatttgcc agcaaagtgg cagccaccca ggaccagtat gcagacgcct ccataggtaa
841 cgtcacgggc agcaacgcgg tgaatgtctt cctgggaatc ggtgtggcct ggtccatcgc
901 tgccatctac cacgcagcca atggggaaca gttcaaagtg tcccctggca cactagcttt
961 ctctgtcact ctcttcacca tttttgcttt catcaatgtg ggggtgctgc tgtatcggcg
1021 gaggccagaa atcggaggtg agctgggtgg gccccggact gccaagctcc tcacatcctg
1081 cctctttgtg ctcctatggc tcttgtacat tttcttctcc tccctggagg cctactgcca
1141 cataaaaggc ttctaaagga actatcagat atagtaaatt tatatatata catatatata
1201 cataaaaatt atgtataatg gacagaggaa actgacattt gtcatgttca cttacctgct
1261 gatggaatcc agcttcaaga gcatactctg tactagggcc gaagtaaaaa accatcacct
1321 cccattccca ggggcatcat catgttcaac aaggcatgga ggca
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