LOCUS BC098144 2446 bp mRNA linear HUM 18-JUL-2005
DEFINITION Homo sapiens protocadherin beta 14, mRNA (cDNA clone
IMAGE:40019180), partial cds.
ACCESSION BC098144
VERSION BC098144.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2446)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2446)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: k Column: 20.
FEATURES Location/Qualifiers
source 1..2446
/db_xref="H-InvDB:HIT000335789"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40019180"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TTGGATGC"
gene <1..2446
/gene="PCDHB14"
/gene_synonym="PCDH-BETA14"
/db_xref="GeneID:56122"
/db_xref="MIM:606340"
CDS <1..2396
/gene="PCDHB14"
/gene_synonym="PCDH-BETA14"
/codon_start=3
/product="PCDHB14 protein"
/protein_id="AAH98144.1"
/db_xref="GeneID:56122"
/db_xref="MIM:606340"
/translation="EIRGALDLRKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFV
ANLARDLGLGVEELSSREARVVSDDNKKYLHLDLLTGNLLLNEKLDRDELCGSTEPCV
LHFQVVLENPLQFFRFELCVKDINDHSPTFLDKEILIKISEGTTVGATFLMESAQDLD
VGSNSLQNYTISPNSHFYIKIPDSSDRKIYPELVLDRALDYEQEAELRLTLTAVDGGS
PPKSGTTLVLIKVLDINDNAPEFPQSLYEVQVPEDRPLGSWIATISAKDLDAGNYGKI
SYTFFHASEDIRKTFEINPISGEVNLRSPLDFEVIQSYTINIQATDGGGLSGKCTLLV
KVMDINDNPPEVTISSITKRIPENASETLVALFSILDQDSGDNGRMICSIQDNLPFFL
KPTFKNFFTLVSEKALDRESQAEYNITITVTDLGTPRLKTEYNITVLLSDVNDNAPTF
TQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYSLLPPQDRHLPLASLVSINAD
NGHLFALRSLDYEALQEFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQN
GSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVR
TARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQA
DSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSG
TGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFQVHDTGRNMGEIENFRNSFGLNIQ"
BASE COUNT 586 a 656 c 639 g 565 t
ORIGIN
1 tggagatcag aggggcactc gatctgcgaa aaaggcaagt tctaatattc cttgttttgc
61 tgggattgtc tcgggcaggt actgaatctg cacactattc tgtggcagag gaaacagaaa
121 ttggctcttt tgtggctaat ctagcgaggg acctagggct gggggtggag gagctgtctt
181 cacgtgaagc ccgggtagtg tctgatgata ataaaaagta tttgcacctt gatttgctga
241 ctgggaattt gctcctaaat gagaaactag accgagacga gctgtgtggc tccaccgagc
301 cctgtgtgct gcattttcag gtggttttgg aaaacccttt acagtttttt cggtttgagc
361 tgtgtgtcaa agacataaat gatcactccc ctacatttct agacaaggaa atacttatta
421 aaatatcaga aggtaccact gttggagcta cctttctaat ggagagtgct caagatttgg
481 atgtcggaag caacagtctc caaaactaca caattagccc caattctcac ttctacatta
541 aaattcccga cagtagtgac agaaagatat acccagagct ggtcctagat agagctttag
601 attatgaaca ggaagctgaa ctcagattaa cactcacagc agtggatggt ggatccccgc
661 ccaagtctgg gacaactttg gttctcatca aggtgttgga catcaatgat aatgcccctg
721 agtttcctca gagtctctat gaggtgcaag tccccgagga cagacccctt ggctcctgga
781 ttgccaccat ctcagctaag gatctggatg caggaaacta tggaaaaata tcttacacat
841 ttttccatgc atcagaagat attcgtaaaa catttgaaat taatccaata tctggggaag
901 ttaatttgag atcacccctg gattttgaag taatacagtc ctacactata aatattcagg
961 caacagatgg tgggggtctt tcaggaaaat gcacccttct agttaaagtt atggatataa
1021 acgacaaccc accagaagtg accatatcgt cgattacaaa gagaattcca gagaatgcct
1081 cagagaccct agtagctctt tttagtatcc tagaccaaga ctctggagac aatgggagga
1141 tgatttgctc tattcaagat aacctccctt ttttcctgaa accgaccttc aagaactttt
1201 tcactctagt ttctgaaaaa gcactggaca gagagagcca agccgagtac aacatcacga
1261 tcaccgtcac agacttgggg acacccaggc tgaaaaccga gtacaacata accgtgctgc
1321 tctctgacgt caatgacaac gcccccacct tcacccaaac ctcctacacc ctgttcgtcc
1381 gcgagaacaa cagccccgcc ctgcacatcg gcagcgtcag cgccacagac agagactcag
1441 gcaccaacgc ccaggtcaac tactcgctgc tgccgcccca ggaccggcac ctgcccctcg
1501 cctccttggt ctccatcaac gcggacaatg gccacctgtt tgccctcagg tcgctggact
1561 acgaggccct acaggagttc gagtttcgcg tgggcgccac agaccgcggg tccccggcgt
1621 tgagcagcga ggcgctggtg cgcgtgctgg tgctggacgc caacgacaac tcgcccttcg
1681 tgctgtaccc gctgcagaac ggctccgcgc cctgcaccga gctggtgccc cgggcggccg
1741 agccgggcta cctggtgacc aaggtggtgg cggtggacgg cgactcgggc cagaacgcct
1801 ggctgtcgta ccagctgctc aaggccacgg agcccgggct gttcggcgtg tgggcgcaca
1861 atggcgaggt gcgcaccgcc aggctgctga gcgagcgcga cgcggccaag cacaggctgg
1921 tggtgctggt caaggacaat ggcgagcctc cgcgctcggc caccgccacg ctgcacgtgc
1981 tcctggtgga cggcttctcc cagccctacc tgccgctccc tgaggcggcc ccggcccagg
2041 cccaggccga ctccctcacc gtctacctgg tggtggcatt ggcctcggtg tcgtcgctct
2101 tcctcttctc ggtgctcctg ttcgtggcgg tgcggctgtg caggaggagc agggcggcct
2161 cggtgggtcg ctgctcggtg cccgagggtc cctttccagg gcatctggtg gacgtgagcg
2221 gcaccgggac cctgtcccag agctaccaat acgaggtgtg tctgacagga ggttccggga
2281 caaatgagtt caaatttctg aagccgatta tccccaattt tcaagttcat gacactggta
2341 ggaatatggg ggaaatcgag aactttcgaa atagctttgg acttaacatt caataaaaca
2401 atttatttta aatgtctaat ttttggttat tcttggcaag ctgatg
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