LOCUS BC098142 2569 bp mRNA linear HUM 25-JUL-2005
DEFINITION Homo sapiens prostaglandin F2 receptor negative regulator, mRNA
(cDNA clone IMAGE:40012156), partial cds.
ACCESSION BC098142
VERSION BC098142.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2569)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2569)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: i Column: 8.
FEATURES Location/Qualifiers
source 1..2569
/db_xref="H-InvDB:HIT000335787"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40012156"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TA"
gene <1..2569
/gene="PTGFRN"
/gene_synonym="CD9P-1"
/gene_synonym="EWI-F"
/gene_synonym="FLJ11001"
/gene_synonym="FPRP"
/gene_synonym="KIAA1436"
/gene_synonym="SMAP-6"
/db_xref="GeneID:5738"
/db_xref="MIM:601204"
CDS <1..2367
/gene="PTGFRN"
/gene_synonym="CD9P-1"
/gene_synonym="EWI-F"
/gene_synonym="FLJ11001"
/gene_synonym="FPRP"
/gene_synonym="KIAA1436"
/gene_synonym="SMAP-6"
/codon_start=1
/product="PTGFRN protein"
/protein_id="AAH98142.1"
/db_xref="GeneID:5738"
/db_xref="MIM:601204"
/translation="ARRAEQARGPGGGAPTLEQPSDQGHYKCSTPSTDATVQGNYEDT
VQVKVLADSLHVGPSARPPPSLSLREGEPFELRCTAASASPLHTHLALLWEVHRGPAR
RSVLALTHEGRFHPGLGYEQRYHSGDVRLDTVGSDAYRLSVSRALSADQGSYRCIVSE
WIAEQGNWQEIQEKAVEVATVVIQPTVLRAAVPKNVSVAEGKELDLTCNITTDRADDV
RPEVTWSFSRMPDSTLPGSRVLARLDRDSLVHSSPHVALSHVDARSYHLLVRDVSKEN
SGYYYCHVSLWAPGHNRSWHKVAEAVSSPAGVGVTWLEPDYQVYLNASKVPGFADDPT
ELACRVVDTKSGEANVRFTVSWYYRMNRRSDNVVTSELLAVMDGDWTLKYGERSKQRA
QDGDFIFSKEHTDTFNFRIQRTTEEDRGNYYCVVSAWTKQRNNSWVKSKDVFSKPVNI
FWALEDSVLVVKARQPKPFFAAGNTFEMTCKVSSKNIKSPRYSVLIMAEKPVGDLSSP
NETKYIISLDQDSVVKLENWTDASRVDGVVLEKVQEDEFRYRMYQTQVSDAGLYRCMV
TAWSPVRGSLWREAATSLSNPIEIDFQTSGPIFNASVHSDTPSVIRGDLIKLFCIITV
EGAALDPDDMAFDVSWFAVHSFGLDKAPVLLSSLDRKGIVTTSRRDWKSDLSLERVSV
LEFLLQVHGSEDQDFGNYYCSVTPWVKSPTGSWQKEAEIHSKPVFITVKMDVLNAFKY
PLLIGVGLSTVIGLLSCLIGYCSSHWCCKKEVQETRRERRRLMSMEMD"
BASE COUNT 568 a 689 c 769 g 543 t
ORIGIN
1 gcgaggagag cggagcaggc gcgcggccca ggcggaggag cgccgactct ggagcagcct
61 tcagaccaag gccactacaa atgttcaacc cccagcacag atgccactgt ccagggaaac
121 tatgaggaca cagtgcaggt taaagtgctg gccgactccc tgcacgtggg ccccagcgcg
181 cggcccccgc cgagcctgag cctgcgggag ggggagccct tcgagctgcg ctgcaccgcc
241 gcctccgcct cgccgctgca cacgcacctg gcgctgctgt gggaggtgca ccgcggcccg
301 gccaggcgga gcgtcctcgc cctgacccac gagggcaggt tccacccggg cctggggtac
361 gagcagcgct accacagtgg ggacgtgcgc ctcgacaccg tgggcagcga cgcctaccgc
421 ctctcagtgt cccgggctct gtctgccgac cagggctcct acaggtgtat cgtcagcgag
481 tggatcgccg agcagggcaa ctggcaggaa atccaagaaa aggccgtgga agttgccacc
541 gtggtgatcc agccgacagt tctgcgagca gctgtgccca agaatgtgtc tgtggctgaa
601 ggaaaggaac tggacctgac ctgtaacatc acaacagacc gagccgatga cgtccggccc
661 gaggtgacgt ggtccttcag caggatgcct gacagcaccc tacctggctc ccgcgtgttg
721 gcgcggcttg accgtgattc cctggtgcac agctcgcctc atgttgcttt gagtcatgtg
781 gatgcacgct cctaccattt actggttcgg gatgttagca aagaaaactc tggctactat
841 tactgccacg tgtccctgtg ggcacccgga cacaacagga gctggcacaa agtggcagag
901 gccgtgtctt ccccagctgg tgtgggtgtg acctggctag aaccagacta ccaggtgtac
961 ctgaatgctt ccaaggtccc cgggtttgcg gatgacccca cagagctggc atgccgggtg
1021 gtggacacga agagtgggga ggcgaatgtc cgattcacgg tttcgtggta ctacaggatg
1081 aaccggcgca gcgacaatgt ggtgaccagc gagctgcttg cagtcatgga cggggactgg
1141 acgctaaaat atggagagag gagcaagcag cgggcccagg atggagactt tattttttct
1201 aaggaacata cagacacgtt caatttccgg atccaaagga ctacagagga agacagaggc
1261 aattattact gtgttgtgtc tgcctggacc aaacagcgga acaacagctg ggtgaaaagc
1321 aaggatgtct tctccaagcc tgttaacata ttttgggcat tagaagattc cgtgcttgtg
1381 gtgaaggcga ggcagccaaa gcctttcttt gctgccggaa atacatttga gatgacttgc
1441 aaagtatctt ccaagaatat taagtcgcca cgctactctg ttctcatcat ggctgagaag
1501 cctgtcggcg acctctccag tcccaatgaa acgaagtaca tcatctctct ggaccaggat
1561 tctgtggtga agctggagaa ttggacagat gcatcacggg tggatggcgt tgttttagaa
1621 aaagtgcagg aggatgagtt ccgctatcga atgtaccaga ctcaggtctc agacgcaggg
1681 ctgtaccgct gcatggtgac agcctggtct cctgtcaggg gcagcctttg gcgagaagca
1741 gcaaccagtc tctccaatcc tattgagata gacttccaaa cctcaggtcc tatatttaat
1801 gcttctgtgc attcagacac accatcagta attcggggag atctgatcaa attgttctgt
1861 atcatcactg tcgagggagc agcactggat ccagatgaca tggcctttga tgtgtcctgg
1921 tttgcggtgc actcttttgg cctggacaag gctcctgtgc tcctgtcttc cctggatcgg
1981 aagggcatcg tgaccacctc ccggagggac tggaagagcg acctcagcct ggagcgcgtg
2041 agtgtgctgg aattcttgct gcaagtgcat ggctccgagg accaggactt tggcaactac
2101 tactgttccg tgactccatg ggtgaagtca ccaacaggtt cctggcagaa ggaggcagag
2161 atccactcca agcccgtttt tataactgtg aagatggatg tgctgaacgc cttcaagtat
2221 cccttgctga tcggcgtcgg tctgtccacg gtcatcgggc tcctgtcctg tctcatcggg
2281 tactgcagct cccactggtg ttgtaagaag gaggttcagg agacacggcg cgagcgccgc
2341 aggctcatgt cgatggagat ggactaggct ggcccgggag gggagtgaca gagggacgtt
2401 ctaggagcaa ttggggcaag aagaggacag tgatatttta aaacaaagtg tgttacacta
2461 aaaaccagtc ctctctaatc tcaggtggga cttggcgctc tctcttttct gcatgtcaag
2521 ttctgagcgc ggacatgttt accagcacac ggctcttctt cccacggca
//