LOCUS BC098106 3255 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SLIT and NTRK-like family, member 5, mRNA (cDNA clone
MGC:119722 IMAGE:40012375), complete cds.
ACCESSION BC098106
VERSION BC098106.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3255)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3255)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: i Column: 9.
FEATURES Location/Qualifiers
source 1..3255
/db_xref="H-InvDB:HIT000335751"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119722 IMAGE:40012375"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TTAGAACG"
gene 1..3255
/gene="SLITRK5"
/gene_synonym="bA364G4.2"
/gene_synonym="KIAA0918"
/db_xref="GeneID:26050"
/db_xref="HGNC:HGNC:20295"
/db_xref="MIM:609680"
CDS 128..3004
/gene="SLITRK5"
/gene_synonym="bA364G4.2"
/gene_synonym="KIAA0918"
/codon_start=1
/product="SLIT and NTRK-like family, member 5"
/protein_id="AAH98106.1"
/db_xref="GeneID:26050"
/db_xref="HGNC:HGNC:20295"
/db_xref="MIM:609680"
/translation="MHTCCPPVTLEQDLHRKMHSWMLQTLAFAVTSLVLSCAETIDYY
GEICDNACPCEEKDGILTVSCENRGIISLSEISPPRFPIYHLLLSGNLLNRLYPNEFV
NYTGASILHLGSNVIQDIETGAFHGLRGLRRLHLNNNKLELLRDDTFLGLENLEYLQV
DYNYISVIEPNAFGKLHLLQVLILNDNLLSSLPNNLFRFVPLTHLDLRGNRLKLLPYV
GLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYSALVGDVVCETPFRLHGRDLD
EVSKQELCPRRLISDYEMRPQTPLSTTGYLHTTPASVNSVATSSSAVYKPPLKPPKGT
RQPNKPRVRPTSRQPSKDLGYSNYGPSIAYQTKSPVPLECPTACSCNLQISDLGLNVN
CQERKIESIAELQPKPYNPKKMYLTENYIAVVRRTDFLEATGLDLLHLGNNRISMIQD
RAFGDLTNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQYNLIREIQSGTFDPVPNLQ
LLFLNNNLLQAMPSGVFSGLTLLRLNLRSNHFTSLPVSGVLDQLKSLIQIDLHDNPWD
CTCDIVGMKLWVEQLKVGVLVDEVICKAPKKFAETDMRSIKSELLCPDYSDVVVSTPT
PSSIQVPARTSAVTPAVRLNSTGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAA
GLFVLVMKRRKKNQSDHTSTNNSDVSSFNMQYSVYGGGGGTGGHPHAHVHHRGPALPK
VKTPAGHVYEYIPHPLGHMCKNPIYRSREGNSVEDYKDLHELKVTYSSNHHLQQQQQP
PPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPAYSVSTIEPREDLLSPVQDADRFYR
GILEPDKHCSTTPAGNSLPEYPKFPCSPAAYTFSPNYDLRRPHQYLHPGAGDSRLREP
VLYSPPSAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF"
BASE COUNT 760 a 936 c 833 g 726 t
ORIGIN
1 agtctcctcg ccctgcctgg gcttgagaaa cctagtgcat accccaaaga gggtttttgt
61 gtatgtgtgt gtttttaaag ggtggctatg atgactgggc cttggagatg tgagactggg
121 aggtaaaatg cacacttgct gccccccagt aactttggaa caggaccttc acagaaaaat
181 gcatagctgg atgctgcaga ctctagcgtt tgctgtaaca tctctcgtcc tttcgtgtgc
241 agaaaccatc gattattatg gggaaatctg tgacaatgca tgtccttgtg aggaaaagga
301 cggcatttta actgtgagct gtgaaaaccg ggggatcatc agtctctctg aaattagccc
361 tccccgtttc ccaatctacc acctcttgtt gtccggaaac cttttgaacc gtctctatcc
421 caatgagttt gtcaattaca ctggggcttc aattttgcat ctaggtagca atgttatcca
481 ggacattgag accggggctt tccatgggct acggggtttg aggagattgc atctaaacaa
541 taataaactg gaacttctgc gagatgatac cttccttggc ttggagaacc tggagtacct
601 acaggtcgat tacaactaca tcagcgtcat tgaacccaat gcttttggga aactgcattt
661 gttgcaggtg cttatcctca atgacaatct tttgtccagt ttacccaaca atcttttccg
721 ttttgtgccc ttaacgcact tggacctccg ggggaaccgg ctgaaacttc tgccctacgt
781 ggggctcttg cagcacatgg ataaagttgt ggagctacag ctggaggaaa acccttggaa
841 ttgttcttgt gagctgatct ctctaaagga ttggttggac agcatctcct attcagccct
901 ggtgggggat gtagtttgtg agaccccctt ccgcttacac ggaagggact tggacgaggt
961 atccaagcag gaactttgcc caaggagact tatttctgac tacgagatga ggccgcagac
1021 gcctttgagc accacggggt atttacacac caccccggcg tcagtgaatt ctgtggccac
1081 ttcttcctct gctgtttaca aacccccttt gaagccccct aaggggactc gccaacccaa
1141 caagcccagg gtgcgcccca cctctcggca gccctctaag gacttgggct acagcaacta
1201 tggccccagc atcgcctatc agaccaaatc cccggtgcct ttggagtgtc ccaccgcgtg
1261 ctcttgcaac ctgcagatct ctgatctggg cctcaacgta aactgccagg agcgaaagat
1321 cgagagcatc gctgaactgc agcccaagcc ctacaatccc aagaaaatgt atctgacaga
1381 gaactacatc gctgtcgtgc gcaggacaga cttcctggag gccacggggc tggacctcct
1441 gcacctgggg aataaccgca tctcgatgat ccaggaccgc gctttcgggg atctcaccaa
1501 cctgaggcgc ctctacctga atggcaacag gatcgagagg ctgagcccgg agttattcta
1561 tggcctgcag agcctgcagt atctcttcct ccagtacaat ctcatccgcg agattcagtc
1621 tggaactttt gacccggtcc caaacctcca gctgctattc ttgaataaca acctcctgca
1681 ggccatgccc tcaggcgtct tctctggctt gaccctcctc aggctaaacc tgaggagtaa
1741 ccacttcacc tccttgccag tgagtggagt tttggaccag ctgaagtcac tcatccaaat
1801 cgacctgcat gacaatcctt gggattgtac ctgtgacatt gtgggcatga agctgtgggt
1861 ggagcagctc aaagtgggcg tcctagtgga cgaggtgatc tgtaaggcgc ccaaaaaatt
1921 cgctgagacc gacatgcgct ccattaagtc ggagctgctg tgccctgact attcagatgt
1981 agtagtttcc acgcccacac cctcctctat ccaggtccct gcgaggacca gcgccgtgac
2041 tcctgcggtc cggttgaata gcaccggggc ccccgcgagc ttgggcgcag gcggaggggc
2101 gtcgtcggtg cccttgtctg tgttaattct cagcctcctg ctggttttca tcatgtccgt
2161 cttcgtggcc gccgggctct tcgtgctggt catgaagcgc aggaagaaga accagagcga
2221 ccacaccagc accaacaact ccgacgtgag ctcctttaac atgcagtaca gcgtgtacgg
2281 cggcggcggc ggcacgggcg gccacccaca cgcgcacgtg catcaccgcg ggcccgcgct
2341 gcccaaggtg aagacgcccg cgggccacgt gtatgaatac atcccccacc cactgggcca
2401 catgtgcaaa aaccccatct accgctcccg agagggcaac tccgtagagg attacaaaga
2461 cctgcacgag ctcaaggtca cctacagcag caaccaccac ctgcagcagc agcagcagcc
2521 gccgccgcca ccgcagcagc cacagcagca gcccccgccg cagctgcagc tgcagcccgg
2581 ggaggaggag aggcgggaaa gccaccactt gcggagcccc gcctacagcg tcagcaccat
2641 cgagccccgg gaggacctgc tgtcgccggt gcaggacgcc gaccgctttt acaggggcat
2701 tttagaacca gacaaacact gctccaccac ccccgccggc aatagcctcc cggaatatcc
2761 caaattcccg tgcagccccg ctgcttacac tttctccccc aactatgacc tgagacgccc
2821 ccatcagtat ttgcacccgg gggcagggga cagcaggcta cgggaaccgg tgctctacag
2881 ccccccgagt gctgtctttg tagaacccaa ccggaacgaa tatctggagt taaaagcaaa
2941 actaaacgtt gagccggact acctcgaagt gctggaaaaa cagaccacgt ttagccagtt
3001 ctaaaagcaa agaaactctc ttggagcttt tgcatttaaa acaaacaagc aagcagacac
3061 acacagtgaa cacatttgat taattgtgtt gtttcaacgt ttagggtgaa gtgccttggc
3121 acgggatttc tcagcttcgg tggaagatac gaaaagggtg tgcaatttcc tttaaaattt
3181 acacgtggga aacatttgtg taaactgggc acatcacttt ctcttcttgc gtgtggggca
3241 ggtgtggaga agggc
//