LOCUS BC096746 3002 bp mRNA linear HTC 13-APR-2006
DEFINITION Homo sapiens FYVE, RhoGEF and PH domain containing 4, mRNA (cDNA
clone IMAGE:5298083), with apparent retained intron.
ACCESSION BC096746
VERSION BC096746.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3002)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3002)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21245127
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3002
/db_xref="H-InvDB:HIT000335703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5298083"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 999 a 628 c 684 g 691 t
ORIGIN
1 atctgttcac tccccaccgg aatgtgatta tccttgctgg gctgggaagt ggggaaagca
61 ggggagcctg tgctgggtga gattatctgc aatggaccgg gttaatggga ggcttgcttt
121 ggctcgctgg aagaacaaat gaagggagtt ttacttcaac catttgtgac ttctggccaa
181 gaggaataaa ttcagctttt ataaggcagc agtacctgtc caaagatcgc tttagttcca
241 ccttgctcca caagcagcac aaccacactg gttggtgaga atgtatctga agaagaggct
301 cagggaataa atgggaacag gccagcaaaa cactcagctg caagtccaaa gccacaagtg
361 cctccaaagc cattacacct gcagaattca ccttcgtcca atatacacca aacccccagg
421 cataaagctt tacctagtgc aaaaccaagg atggaggaaa ttaaacctgc ctctgcttct
481 tgtgtctcaa aagaaaaacc cagtaaggta tcagatctca tcagtcgctt tgaaggaggc
541 agctcattat caaattatag tgatttgaag aaagagtctg ctgtgaacct aaatgctcct
601 agaaccccag gaaggcatgg attgacaacc acacctcaac aaaaactcct ctcccagcac
661 ttgccacaga ggcagggaaa tgatacagat aagactcagg gtgcacagac ttgtgtggcc
721 aacggtgtaa tggcagcaca aaaccagatg gaatgtgagg aggagaaagc tgccactctt
781 agctcagata cttctattca agcttctgaa cccttgcttg atacgcacat agtgaatgga
841 gaaagagatg aaactgccac agctcctgca tcacccacaa cagacagctg tgatggaaat
901 gcttctgaca gtagctacag gactccaggc ataggcccag tgctccccct agaagaaaga
961 ggggcagaaa cagaaaccaa ggtacaagag agggaaaatg gggaaagccc tctggaactg
1021 gagcagctgg accagcacca tgagatgaag gagactaatg agcaaaaact tcacaaaata
1081 gccaatgaac ttttgcttac tgaaagagct tatgtcaacc gacttgacct cttagatcag
1141 aaaatagagt ggaggtgaat ttagaaaatt aacaaccatc tggacattat gaaggaatag
1201 acctccttct gcctacatgt aacagaatgg caattaagag gtattttatt gcaaactgtt
1261 ggaagaagca aaccgaggct cgtttccagc agagatggtg aataaaatct tttctaatat
1321 ttcatcaata aatgccttcc atagtaaatt cctcttgcca gagctggaga aacgaatgca
1381 agaatgggaa actactccta gaattggaga catccttcag aaattggcac cattccttaa
1441 gatgtatgga gaatatgtga aaggatttga taatgcaatg gaattggtta aaaacatgac
1501 agaacgtatt ccccagttca aatcagtggt tgaagaaatt cagaaaacct ttctcattac
1561 agaaacagaa aatctgtggg agcttaactt tgcagcatca catgctagaa cctgttcagc
1621 ggattccccg gtatgagatg ctccttaagg actatctaag gaaattgcct cctgattccc
1681 tggactggaa tgatgctaaa aaatcacttg aaattatatc tacagcagca agccattcta
1741 atagtgcaat aaggaaaatg gagaacctaa agaaactctt agagatttat gaaatgttgg
1801 gagaagaaga agacattgta aacccttcaa atgaactaat aaaagaagga cagatcctca
1861 aactagctgc tcggaacact tcagcacaag aacgctacct tttcttattc aacaacatgt
1921 tgctgtactg tgtgcccaaa ttcagcttgg taggctctaa attcacagtt cgagccaggg
1981 ttggcattga tggaatgaaa attgtagaga ctcaaaatga agaatatcca catactttcc
2041 aggtgtctgg gaaagagaga acactggaac tgcaggccag ttctgcgcaa gacaaagaag
2101 aatggatcaa ggcccttcaa gaaaccatcg atgcttttca tcaaaggcat gaaaccttca
2161 gaaatgcaat tgcaaaggat aatgacattc actcagaggt ttctactgct gagctaggga
2221 aaagagcccc aagatggatc cgagataatg aagtgacaat gtgtatgaaa tgtaaagaac
2281 ctttcaatgc actgacacga aggaggcatc attgtcgagc atgtggatat gtggtttgtt
2341 ggaaatgctc cgactacaaa gctcaacttg aatatgatgg tggtaaattg agcaaagttt
2401 gtaaagactg ttatcaaatc ataagtggat tcacagacag tgaagaaaag aaaagaaaag
2461 gaattttaga gattgaatca gcagaagtat ctggaaacag tgtggtgtgc agctttcttc
2521 agtatatgga gaagtcaaaa ccttggcaga aagcttggtg tgtgatcccc aggcaagacc
2581 ctcttgtgct gtacatgtat ggtgcccccc aggacgtcag agcccaggcc accattccac
2641 ttctgggcta tgtggtggat gaaatgccaa ggagcgcaga cctgccacac agtttcaaac
2701 tgacccagtc taagtccgtg cacagctttg ctgcagacag tgaggaactg aagcagaagt
2761 ggctgaaagt catcctttta gctgtcacag gtgagacacc aggtggtcca aatgagcatc
2821 cagccacctt ggatgatcat cctgaaccta agaaaaaatc agaatgctga actcctccag
2881 gaccagccat ggtgtggagg tctcaggact tacagctcaa gacattccca gctcttctta
2941 cacatctgct agcactttat gttgaaaaat ataggcccat aaatgcaaaa aaaaaaaaaa
3001 aa
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