LOCUS BC096679 1265 bp mRNA linear ROD 05-SEP-2008
DEFINITION Mus musculus CDC42 binding protein kinase alpha, mRNA (cDNA clone
IMAGE:832098), partial cds.
ACCESSION BC096679
VERSION BC096679.1
KEYWORDS .
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1265)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1265)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Marcello Bento Soares, Ph.D.
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 209 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..1265
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="taxon:10090"
/clone="IMAGE:832098"
/tissue_type="Mammary gland"
/clone_lib="Soares_mammary_gland_NbMMG"
/lab_host="DH10B"
/note="Vector: pT7T3-Pac"
gene <1..1265
/gene="Cdc42bpa"
/gene_synonym="DMPK-like"
/db_xref="GeneID:226751"
/db_xref="MGI:MGI:2441841"
CDS <1..812
/gene="Cdc42bpa"
/gene_synonym="DMPK-like"
/codon_start=3
/product="Cdc42bpa protein"
/protein_id="AAH96679.1"
/db_xref="GeneID:226751"
/db_xref="MGI:MGI:2441841"
/translation="HEGENAVDIFDVNSMEWIQTLPLKKVRPLNTEGSLNLLGLETIR
LIYFKNKMAEGDELVVPETSDNSRKQMVRNINNKRRYSFRFPEEERMQQRREMLRDPE
MRNKLISNPTNFNHIAHMGPGDGIQILKDLPMNPRPQESRTVFSGSVSIPSITKSRPE
PGRSMSASSGLSARSSAQNGSALKREFSGGSYNTKRQPMPSPSEGSLSSGGMDQGSDA
PARDYDGEDSDSPRHSTASNSSNLSSPPSPISPQKTKSLSLESTDRGSWDP"
BASE COUNT 404 a 321 c 283 g 257 t
ORIGIN
1 ggcacgaggg tgaaaacgca gttgatatct ttgatgtaaa ctccatggaa tggatacaga
61 ctcttcctct caaaaaggtc cgacctttaa acactgaagg atcattaaat ctcttaggat
121 tggagaccat tagattaata tatttcaaaa ataagatggc agaaggggat gaacttgtgg
181 ttcctgaaac atcagataat agtcggaaac aaatggttag aaatatcaac aacaaacggc
241 gttactcctt ccgattccct gaagaagaga ggatgcaaca gaggagggag atgctacgag
301 atccagaaat gagaaataaa ttaatttcta acccaactaa ttttaaccac atagcacaca
361 tgggtcctgg agatggaata cagatcctaa aagacctgcc catgaaccca cggcctcagg
421 aaagccggac agtattcagt ggctccgtca gtattccctc catcaccaag tcccgccctg
481 agccaggccg ctccatgagt gccagcagcg gcctgtctgc acggtcgtca gcccagaatg
541 gcagtgcact aaagagggaa ttctctggag gaagctataa cacaaagcga cagcccatgc
601 cctctccctc ggagggctct ttgtcatcag gaggcatgga ccaaggaagt gacgcccctg
661 cgagggacta tgatggagag gactctgatt ctccaaggca ttccacagct tccaacagct
721 ctaacctgag cagcccccca agtcccattt caccccaaaa gaccaagagc ctctccctgg
781 agagcacaga ccgcgggagc tgggatccat gagcccagga ccggtgactg caggcaggga
841 ctctgcactc ccactccgac aacgtgcctg gcagcagcct tgccttccgc actgctgcaa
901 tggggattcc tccgcagcca ggcccgcttc accctcccct caacccccag gtagcttctg
961 tagacagact gcgcagacgc agcgctaaga gtagaccggt tgtgttctca ccgtagccct
1021 cacgtagcgc ccagcagcct ccatgagcgt cagccaactg ttgccaggaa gtaaaccctc
1081 acgaattaaa acaatgcata ttttactaca atacagagtt taaataaata catagatgta
1141 gaagttaaat actgaatgta aatagtcaaa gaagcatctt gtgtttgatg aaagatggat
1201 gcgtatataa gaaagatcat ttaatttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaa
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