LOCUS BC096322 2356 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens solute carrier family 6 (neurotransmitter transporter,
glycine), member 5, mRNA (cDNA clone IMAGE:40007846), complete cds.
ACCESSION BC096322
VERSION BC096322.3
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2356)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2356)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Jun 29, 2006 this sequence version replaced BC096322.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 2 Row: j Column: 14
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2356
/db_xref="H-InvDB:HIT000335610"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40007846"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TGCCTACC sequenced from the reverse primer"
gene 1..2356
/gene="SLC6A5"
/gene_synonym="GLYT2"
/db_xref="GeneID:9152"
/db_xref="HGNC:HGNC:11051"
/db_xref="MIM:604159"
CDS 643..1830
/gene="SLC6A5"
/gene_synonym="GLYT2"
/codon_start=1
/product="SLC6A5 protein"
/protein_id="AAH96322.1"
/db_xref="GeneID:9152"
/db_xref="HGNC:HGNC:11051"
/db_xref="MIM:604159"
/translation="MMLALAGLPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAMLI
ISVLIAIYYNVIICYTLFYLFASFVSVLPWGSCNNPWNTPECKDKTKLLLDSCVISDH
PKIQIKNSTFCMTAYPNVTMVNFTSQANKTFVSGSEEYFKYFVLKISAGIEYPGEIRW
PLALCLFLAWVIVYASLAKGIKTSGKVVYFTATFPYVVLVILLIRGVTLPGAGAGIWY
FITPNWEKLTNATVWKDAATQIFFSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCTNS
ATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRLPLSPFWAIIFF
LMLLTLGLDTMFATIETIVTSISDEFPKYLRTHKPVFTLGCCICFFIMGFPMITQGGI
YMF"
BASE COUNT 496 a 660 c 600 g 600 t
ORIGIN
1 tctcctgcct gagccaaacc cagtcttgtc aatagcgggt ttcaccctcc accagttcag
61 tctgttgcct gtgtcagaca tggattgcag tgctcccaag gaaatgaata aactgccagc
121 caacagcccg gaggcggcgg cggcgcaggg ccacccggat ggcccatgcg ctcccaggac
181 gagcccggag caggagcttc ccgcggctgc cgccccgccg ccgccacgtg tgcccaggtc
241 cgcttccacc ggcgcccaaa ctttccagtc agcggacgcg cgagcctgcg aggctgagcg
301 gccaggagtg gggtcttgca aactcagtag cccgcgggcg caggaggcct ctgcagctct
361 gcgggacttg agagaggcgc aaggcgcgca ggcctcgccc cctcccggga gctccgggcc
421 cggcaacgcg ctgcactgta agatcccttt tctgcgaggc ccggaggggg atgcgaacgt
481 gagtgtgggc aagggcaccc tggagcggaa caatacccct gttgtgggct gggtgaacat
541 gagccagagc accgtggtgc tgggcacgga tggaatcacg tccgtgctcc cgggcagcgt
601 ggccaccgtt gccacccagg tgctttcctc atcccttacc tgatgatgct ggctctggct
661 ggattaccca tcttcttctt ggaggtgtcg ctgggccagt ttgccagcca gggaccagtg
721 tctgtgtgga aggccatccc agctctacaa ggctgtggca tcgcgatgct gatcatctct
781 gtcctaatag ccatatacta caatgtgatt atttgctata cacttttcta cctgtttgcc
841 tcctttgtgt ctgtactacc ctggggctcc tgcaacaacc cttggaatac gccagaatgc
901 aaagataaaa ccaaactttt attagattcc tgtgttatca gtgaccatcc caaaatacag
961 atcaagaact cgactttctg catgaccgct tatcccaacg tgacaatggt taatttcacc
1021 agccaggcca ataagacatt tgtcagtgga agtgaagagt acttcaagta ctttgtgctg
1081 aagatttctg cagggattga atatcctggc gagatcaggt ggccactagc tctctgcctc
1141 ttcctggctt gggtcattgt gtatgcatcg ttggctaaag gaatcaagac ttcaggaaaa
1201 gtggtgtact tcacggccac gttcccgtat gtcgtactcg tgatcctcct catccgagga
1261 gtcaccctgc ctggagctgg agctgggatc tggtacttca tcacacccaa ctgggagaaa
1321 ctcacgaatg ccacggtgtg gaaagatgct gctactcaga ttttcttctc tttatctgct
1381 gcatggggag gcctgatcac tctctcttct tacaacaaat tccacaacaa ctgctacagg
1441 gacactctaa ttgtcacctg caccaacagt gccacaagca tctttgccgg cttcgtcatc
1501 ttctccgtta tcggcttcat ggccaatgaa cgcaaagtca acattgagaa tgtggcagac
1561 caagggccag gcattgcatt tgtggtttac ccggaagcct taaccaggct gcctctctct
1621 ccgttctggg ccatcatctt tttcctgatg ctcctcactc ttggacttga cactatgttt
1681 gccaccatcg agaccatagt gacctccatc tcagacgagt ttcccaagta cctacgcaca
1741 cacaagccag tgtttactct gggctgctgc atttgtttct tcatcatggg ttttccaatg
1801 atcactcagg gtggaattta catgttttag cttgtggaca cctatgctgc ctcctatgcc
1861 cttgtcatca ttgccatttt tgagctcgtg gggatctctt atgtgtatgg cttgcaaaga
1921 ttctgtgaag atatagagat gatgattgga ttccagccta acatcttctg gaaagtctgc
1981 tgggcatttg taaccccaac cattttaacc tttatccttt gcttcagctt ttaccagtgg
2041 gagcccatga cctatggctc ttaccgctat cctaactggt ccatggtgct cggatggcta
2101 atgctcgcct gttccgtcat ctggatccca attatgtttg tgataaaaat gcatctggcc
2161 cctggaagat ttattgagag gctgaagttg gtgtgctcgc cacagccgga ctggggccca
2221 ttcttagctc aacaccgcgg ggagcgttac aagaacatga tcgacccctt gggaacctct
2281 tccttgggac tcaaactgcc agtgaaggat ttggaactgg gcactcagtg ctagtccagt
2341 ggtgtgggat ggtcca
//