LOCUS BC096320 2495 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens solute carrier family 6 (neurotransmitter transporter,
glycine), member 5, mRNA (cDNA clone MGC:116999 IMAGE:40007842),
complete cds.
ACCESSION BC096320
VERSION BC096320.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2495)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2495)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Jun 29, 2006 this sequence version replaced BC096320.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 2 Row: i Column: 14.
FEATURES Location/Qualifiers
source 1..2495
/db_xref="H-InvDB:HIT000335608"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:116999 IMAGE:40007842"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AAATACCT sequenced from the reverse primer"
gene 1..2495
/gene="SLC6A5"
/gene_synonym="GLYT2"
/db_xref="GeneID:9152"
/db_xref="HGNC:HGNC:11051"
/db_xref="MIM:604159"
CDS 80..2473
/gene="SLC6A5"
/gene_synonym="GLYT2"
/codon_start=1
/product="solute carrier family 6 (neurotransmitter
transporter, glycine), member 5"
/protein_id="AAH96320.1"
/db_xref="GeneID:9152"
/db_xref="HGNC:HGNC:11051"
/db_xref="MIM:604159"
/translation="MDCSAPKEMNKLPANSPEAAAAQGHPDGPCAPRTSPEQELPAAA
APPPPRVPRSASTGAQTFQSADARACEAERPGVGSCKLSSPRAQAASAALRDLREAQG
AQASPPPGSSGPGNALHCKIPSLRGPEGDANVSVGKGTLERNNTPVVGWVNMSQSTVV
LGTDGITSVLPGSVATVATQEDEQGDENKARGNWSSKLDFILSMVGYAVGLGNVWRFP
YLAFQNGGGAFLIPYLMMLALAGLPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAM
LIISVLIAIYYNVIICYTLFYLFASFVSVLPWGSCNNPWNTPECKDKTKLLLDSCVIS
DHPKIQIKNSTFCMTAYPNVTMVNFTSQANKTFVSGSEEYFKYFVLKISAGIEYPGEI
RWPLALCLFLAWVIVYASLAKGIKTSGKVVYFTATFPYVVLVILLIRGVTLPGAGAGI
WYFITPNWEKLTNATVWKDAATQIFFSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCT
NSATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRLPLSPFWAII
FFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTHKPVFTLGCCICFFIMGFPMITQG
GIYMFQLVDTYAASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFQPNIFWKVCWA
FVTPTILTFILCFSFYQWEPMTYGSYRYPNWSMVLGWLMLACSVIWIPIMFVIKMHLA
PGRFIERLKLVCSPQPDWGPFLAQHRGERYKNMIDPLGTSSLGLKLPVKDLELGTQC"
BASE COUNT 526 a 692 c 652 g 625 t
ORIGIN
1 tctcctgcct gagccaaacc cagtcttgtc aatagcgggt ttcaccttcc accagttcag
61 tctgttgcct gtgtcagaca tggattgcag tgctcccaag gaaatgaata aactgccagc
121 caacagcccg gaggcggcgg cggcgcaggg ccacccggat ggcccatgcg ctcccaggac
181 gagcccggag caggagcttc ccgcggctgc cgccccgccg ccgccacgtg tgcccaggtc
241 cgcttccacc ggcgcccaaa ctttccagtc agcggacgcg cgagcctgcg aggctgagcg
301 gccaggagtg gggtcttgca aactcagtag cccgcgggcg caggcggcct ctgcagctct
361 gcgggacttg agagaggcgc aaggcgcgca ggcctcgccc cctcccggga gctctgggcc
421 cggcaacgcg ttgcactgta agatcccttc tctgcgaggc ccggaggggg atgcgaacgt
481 gagtgtgggc aagggcaccc tggagcggaa caatacccct gttgtgggct gggtgaacat
541 gagccagagc accgtggtgc tgggcacgga tggaatcacg tccgtgctcc cgggcagcgt
601 ggccaccgtt gccacccagg aggacgagca aggggatgag aataaggccc gagggaactg
661 gtccagcaaa ctggacttca tcctgtccat ggtggggtac gcagtggggc tgggcaatgt
721 ctggaggttt ccctacctgg ccttccagaa cgggggaggt gctttcctca tcccttacct
781 gatgatgctg gctctggctg gattacccat cttcttcttg gaggtgtcgc tgggccagtt
841 tgccagccag ggaccagtgt ctgtgtggaa ggccatccca gctctacaag gctgtggcat
901 cgcgatgctg atcatctctg tcctaatagc catatactac aatgtgatta tttgctatac
961 acttttctac ctgtttgcct cctttgtgtc tgtactaccc tggggctcct gcaacaaccc
1021 ttggaatacg ccagaatgca aagataaaac caaactttta ttagattcct gtgttatcag
1081 tgaccatccc aaaatacaga tcaagaactc gactttctgc atgaccgctt atcccaacgt
1141 gacaatggtt aatttcacca gccaggccaa taagacattt gtcagtggaa gtgaagagta
1201 cttcaagtac tttgtgctga agatttctgc agggattgaa tatcctggcg agatcaggtg
1261 gccactagct ctctgcctct tcctggcttg ggtcattgtg tatgcatcgt tggctaaagg
1321 aatcaagact tcaggaaaag tggtgtactt cacggccacg ttcccgtatg tcgtactcgt
1381 gatcctcctc atccgaggag tcaccctgcc tggagctgga gctgggatct ggtacttcat
1441 cacacccaac tgggagaaac tcacgaatgc cacggtgtgg aaagatgctg ccactcagat
1501 tttcttctct ttatctgctg catggggagg cctgatcact ctctcttctt acaacaaatt
1561 ccacaacaac tgctacaggg acactctaat tgtcacctgc accaacagtg ccacaagcat
1621 ctttgccggc ttcgtcatct tctccgttat cggcttcatg gccaatgaac gcaaagtcaa
1681 cattgagaat gtggcagacc aagggccagg cattgcattt gtggtttacc cggaagcctt
1741 aaccaggctg cctctctctc cgttctgggc catcatcttt ttcctgatgc tcctcactct
1801 tggacttgac actatgtttg ccaccatcga gaccatagtg acctccatct cagacgagtt
1861 tcccaagtac ctacgcacac acaagccagt gtttactctg ggctgctgca tttgtttctt
1921 catcatgggt tttccaatga tcactcaggg tggaatttac atgtttcagc ttgtggacac
1981 ctatgctgcc tcctatgccc ttgtcatcat tgccattttt gagctcgtgg ggatctctta
2041 tgtgtatggc ttgcaaagat tctgtgaaga tatagagatg atgattggat tccagcctaa
2101 catcttctgg aaagtctgct gggcatttgt aaccccaacc attttaacct ttatcctttg
2161 cttcagcttt taccagtggg agcccatgac ctatggctct taccgctatc ctaactggtc
2221 catggtgctc ggatggctaa tgctcgcctg ttccgtcatc tggatcccaa ttatgtttgt
2281 gataaaaatg catctggccc ctggaagatt tattgagagg ctgaagttgg tgtgctcgcc
2341 acagccggac tggggcccat tcttagctca acaccgcggg gagcgttaca agaacatgat
2401 cgaccccttg ggaacctctt ccttgggact caaactgcca gtgaaggatt tggaactggg
2461 cactcagtgc tagtccagtg gtgtgggatg gtcca
//