LOCUS BC096297 2036 bp mRNA linear HUM 19-MAR-2007 DEFINITION Homo sapiens collagen, type VIII, alpha 2, mRNA (cDNA clone IMAGE:40007336), partial cds. ACCESSION BC096297 VERSION BC096297.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2036) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2036) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-MAY-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 2 Row: j Column: 6. FEATURES Location/Qualifiers source 1..2036 /db_xref="H-InvDB:HIT000335585" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40007336" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: TACCAAT sequenced from the forward primer" gene <1..2036 /gene="COL8A2" /gene_synonym="PPCD" /gene_synonym="PPCD2" /db_xref="GeneID:1296" /db_xref="HGNC:HGNC:2216" /db_xref="MIM:120252" CDS <1..1974 /gene="COL8A2" /gene_synonym="PPCD" /gene_synonym="PPCD2" /codon_start=1 /product="COL8A2 protein" /protein_id="AAH96297.1" /db_xref="GeneID:1296" /db_xref="HGNC:HGNC:2216" /db_xref="MIM:120252" /translation="GRHAGDSDTPVFAAAAATEMPLPLLPMDLKGEPGPPGKPGPRGP PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGI RGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKG DNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRG EPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG PKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGE AGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGP GVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGR AGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGA VLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIF TCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPN DQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT" BASE COUNT 329 a 670 c 729 g 308 t ORIGIN 1 ggacgccatg ctggggactc tgacacccct gtcttcgctg ctgctgctgc tactgaaatg 61 cctctaccgc tgctgccgat ggacctgaag ggagagcccg gcccccctgg gaagcccggg 121 cctcggggtc cccctggccc ccctggcttc ccaggaaaac caggcatggg aaagccagga 181 ctccatgggc agcctggccc tgctgggccc cctggcttct cccggatggg caaggctggt 241 cccccagggc tccctggcaa ggtcgggcca ccagggcagc cggggcttcg gggggagcca 301 ggaatacgag gggaccaggg cctccgggga cccccaggac cccctggcct cccgggcccc 361 tcaggcatta ctatccctgg aaaaccaggt gcccaagggg tgccagggcc cccaggattc 421 cagggggaac cagggcccca gggggagcct gggcccccag gtgatcgagg cctcaagggg 481 gataatggag tgggccagcc cgggctgcct ggggccccag ggcagggggg tgcccccggc 541 ccccccggcc tccctggtcc agctggctta ggcaaacctg gtttggatgg gcttcctggg 601 gccccaggag acaagggtga gtctgggcct cctggagttc caggccccag gggggagcca 661 ggagctgtgg gcccaaaagg acctcctgga gtagacggtg tgggagtccc aggggcagca 721 gggttgccag gaccacaggg cccatcaggg gccaaagggg agccagggac ccggggcccc 781 cctgggctga taggccccac tggctatggg atgccaggac tgccaggccc caagggggac 841 aggggcccag ctggggtccc aggactcttg ggggacaggg gtgagccagg ggaggatggg 901 gagccagggg agcagggccc acagggtctt gggggtcccc ctggacttcc tgggtctgca 961 gggcttcctg gcagacgtgg gccccctggg cctaagggtg aggcagggcc tggaggaccc 1021 ccaggagtgc ctggcattcg aggtgaccag gggcctagtg gcctggctgg gaaaccaggg 1081 gtcccaggtg agaggggact tcctggggcc catggacccc ctggaccaac tgggcccaag 1141 ggtgagccgg gtttcacggg tcgccctgga ggaccagggg tggcaggagc cctggggcag 1201 aaaggtgact tggggctccc tgggcagcct ggcctgaggg gtccctcagg aatcccagga 1261 ctccagggtc cagctggccc tattgggccc caaggcctgc cgggcctgaa gggggaacca 1321 ggcctgccag ggccccctgg agaggggaga gcaggggaac ctggcacggc tgggcccacg 1381 gggcccccag gggtccctgg ctcccctgga atcacgggcc ctccggggcc tcccgggccc 1441 ccgggacccc ctggtgcccc tggggccttc gatgagactg gcatcgcagg cttgcacctg 1501 cccaacggcg gtgtggaggg tgccgtgctg ggcaaggggg gcaagccaca gtttgggctg 1561 ggcgagctgt ctgcccatgc cacaccggcc ttcactgcgg tgctcacctc gcccttcccc 1621 gcctcgggca tgcccgtgaa atttgaccgg actctctaca atggccacag cggctacaac 1681 ccagccactg gcatcttcac ctgccctgtg ggcggcgtct actactttgc ttaccatgtg 1741 cacgtcaagg gcaccaacgt gtgggtggcc ctgtacaaga acaacgtgcc ggccacctat 1801 acctacgatg agtacaagaa gggctacctg gaccaggcat ctggtggggc cgtgctccag 1861 ctgcggccca acgaccaggt ctgggtgcag atgccgtcgg accaggccaa cggcctctac 1921 tccacggagt acatccactc ctccttttca ggattcttgc tctgccccac ataacccgcg 1981 gggggtgtcc tgctgccctg gcctcctccc ctttagtggt agagcgacct tttcaa //