LOCUS BC096296 1353 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens collagen, type VIII, alpha 2, mRNA (cDNA clone
MGC:116972 IMAGE:40007335), complete cds.
ACCESSION BC096296
VERSION BC096296.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1353)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1353)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Jun 29, 2006 this sequence version replaced BC096296.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 2 Row: j Column: 5.
FEATURES Location/Qualifiers
source 1..1353
/db_xref="H-InvDB:HIT000335584"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:116972 IMAGE:40007335"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: AGCATCTT sequenced from the reverse primer"
gene 1..1353
/gene="COL8A2"
/gene_synonym="FLJ00201"
/gene_synonym="PPCD"
/gene_synonym="PPCD2"
/db_xref="GeneID:1296"
/db_xref="HGNC:HGNC:2216"
/db_xref="MIM:120252"
CDS 8..1291
/gene="COL8A2"
/gene_synonym="FLJ00201"
/gene_synonym="PPCD"
/gene_synonym="PPCD2"
/codon_start=1
/product="COL8A2 protein"
/protein_id="AAH96296.1"
/db_xref="GeneID:1296"
/db_xref="HGNC:HGNC:2216"
/db_xref="MIM:120252"
/translation="MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYI
QPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGM
GKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGP
PGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGA
PGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGAFDETGIAGLHLPNGGVE
GAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATG
IFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLR
PNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT"
BASE COUNT 216 a 455 c 453 g 229 t
ORIGIN
1 ggacgccatg ctggggactc tgacacccct gtcttcgctg ctgctgctgc tactggtgct
61 ggtgctgggg tgtgggccgc gggcgtcctc tggtggcggg gccggtgggg cggcgggcta
121 tgccccagtg aagtacatcc agcccatgca gaaaggacct gtgggaccgc ccttccgtga
181 gggcaaaggc cagtacctgg aaatgcctct accgctgctg ccgatggacc tgaagggaga
241 gcccggcccc cctgggaagc ccgggcctcg gggtccccct ggcccccctg gcttcccagg
301 aaaaccaggc atgggaaagc caggactcca tgggcagcct ggccctgctg ggccccctgg
361 cttctcccgg atgggcaagg ctggtccccc agggctccct ggcaaggtcg ggccaccagg
421 gcagccgggg cttcgggggg agccaggaat acgaggggac cagggcctcc ggggaccccc
481 aggaccccct ggcctcccgg gcccctcagg cattactatc cctggaaaac caggtgccca
541 aggggtgcca gggcccccag gattccaggg ggaaccaggg ccccaggggg agcctgggcc
601 cccaggtgat cgaggcctca agggggataa tggagtgggc cagcccgggc tgcctggggc
661 cccagggcag gggggtgccc ccggcccccc cggcctccct ggtccagctg gcttaggcaa
721 acctggtttg gatgggcttc ctggggcccc aggagacaag ggtgagtctg ggcctcctgg
781 ggccttcgat gagactggca tcgcaggctt gcacctgccc aacggcggtg tggagggtgc
841 cgtgctgggc aaggggggca agccacagtt tgggctgggc gagctgtctg cccatgccac
901 accggccttc actgcggtgc tcacctcgcc cttccccgcc tcgggcatgc ccgtgaaatt
961 tgaccggact ctctacaatg gccacagcgg ctacaaccca gccactggca tcttcacctg
1021 ccctgtgggc ggcgtctact actttgctta ccatgtgcac gtcaagggca ccaacgtgtg
1081 ggtggccctg tacaagaaca acgtgccggc cacctatacc tacgatgagt acaagaaggg
1141 ctacctggac caggcatctg gtggggccgt gctccagctg cggcccaacg accaggtctg
1201 ggtgcagatg ccgtcggacc aggccaacgg cctctactcc acggagtaca tccactcctc
1261 cttttcagga ttcttgctct gccccacata acccgcgggg ggtgtcctgc tgccctggcc
1321 tcctcccctt tagtggtaga gcgacctttt caa
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