LOCUS BC096295 836 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens collagen, type VIII, alpha 2, mRNA (cDNA clone IMAGE:40007332), complete cds. ACCESSION BC096295 VERSION BC096295.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 836) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 836) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-MAY-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 2 Row: i Column: 5 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..836 /db_xref="H-InvDB:HIT000335583" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40007332" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: CTCCTATA sequenced from the forward primer" gene 1..836 /gene="COL8A2" /gene_synonym="FLJ00201" /gene_synonym="PPCD" /gene_synonym="PPCD2" /db_xref="GeneID:1296" /db_xref="HGNC:HGNC:2216" /db_xref="MIM:120252" CDS 430..774 /gene="COL8A2" /gene_synonym="FLJ00201" /gene_synonym="PPCD" /gene_synonym="PPCD2" /codon_start=1 /product="COL8A2 protein" /protein_id="AAH96295.1" /db_xref="GeneID:1296" /db_xref="HGNC:HGNC:2216" /db_xref="MIM:120252" /translation="MPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNV WVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYI HSSFSGFLLCPT" BASE COUNT 130 a 283 c 261 g 162 t ORIGIN 1 ggacgccatg ctggggactc tgacacccct gtcttcgctg ctgctgctgc tactggtgct 61 ggtgctgggg tgtgggccgc gggcgtcctc tggtggcggg gccggtgggg cggcgggcta 121 tgccccagtg aagtacatcc agcccatgca gaaaggacct gtgggaccgc ccttccgtga 181 gggcaaaggc cagtacctgg ctcccctgga atcacgggcc ctccggggcc tcccgggccc 241 ccgggacccc ctggtgcccc tggggccttc gatgagactg gcatcgcagg cttgcacctg 301 cccaacggcg gtgtggaggg tgccgtgctg ggcaaggggg gcaagccaca gtttgggctg 361 ggcgagctgt ctgcccatgc cacaccggcc ttcactgcgg tgctcacctc gcccttcccc 421 gcctcgggca tgcccgtgaa atttgaccgg actctctaca atggccacag cggctacaac 481 ccagccactg gcatcttcac ctgccctgtg ggcggcgtct actactttgc ttaccatgtg 541 cacgtcaagg gcaccaacgt gtgggtggcc ctgtacaaga acaacgtgcc ggccacctat 601 acctacgatg agtacaagaa gggctacctg gaccaggcat ctggtggggc cgtgctccag 661 ctgcggccca acgaccaggt ctgggtgcag atgccgtcgg accaggccaa cggcctctac 721 tccacggagt acatccactc ctccttttca ggattcttgc tctgccccac ataacccgcg 781 gggggtgtcc tgctgccctg gcctcctccc ctttagtggt agagcgacct tttcaa //