LOCUS BC095441 2062 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens claudin domain containing 1, mRNA (cDNA clone
MGC:111162 IMAGE:30718858), complete cds.
ACCESSION BC095441
VERSION BC095441.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2062)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2062)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Professor Miklos Palkovits
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 68 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11096339.
FEATURES Location/Qualifiers
source 1..2062
/db_xref="H-InvDB:HIT000335234"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:111162 IMAGE:30718858"
/tissue_type="Spinal cord"
/clone_lib="NIH_MGC_227"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2062
/gene="CLDND1"
/gene_synonym="GENX-3745"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
CDS 96..857
/gene="CLDND1"
/gene_synonym="GENX-3745"
/codon_start=1
/product="claudin domain containing 1"
/protein_id="AAH95441.1"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
/translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSS
DLNKSIWDEFISDEADEKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDV
VTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLC
ACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCL
ACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
BASE COUNT 620 a 391 c 372 g 679 t
ORIGIN
1 gagggtgaag ctggcggagc aggaggatgg gcggtgatag actagagaac aagacctctg
61 tctccgtagc atcctggagc agtctgaatg ccagaatgga taaccgtttt gctacagcat
121 ttgtaattgc ttgtgtgctt agcctcattt ccaccatcta catggcagcc tccattggca
181 cagacttctg gtatgaatat cgaagtccag ttcaagaaaa ttccagtgat ttgaataaaa
241 gcatctggga tgaattcatt agtgatgagg cagatgaaaa gacttataat gatgcacttt
301 ttcgatacaa tggcacagtg ggattgtgga gacggtgtat caccataccc aaaaacatgc
361 attggtatag cccaccagaa aggacagagt catttgatgt ggtcacaaaa tgtgtgagtt
421 tcacactaac tgagcagttc atggagaaat ttgttgatcc cggaaaccac aatagcggga
481 ttgatctcct taggacctat ctttggcgtt gccagttcct tttacctttt gtgagtttag
541 gtttgatgtg ctttggggct ttgatcggac tttgtgcttg catttgccga agcttatatc
601 ccaccattgc cacgggcatt ctccatctcc ttgcaggtct gtgtacactg ggctcagtaa
661 gttgttatgt tgctggaatt gaactactcc accagaaact agagctccct gacaatgtat
721 ccggtgaatt tggatggtcc ttctgcctgg cttgtgtctc tgctccctta cagttcatgg
781 cttctgctct cttcatctgg gctgctcaca ccaaccggaa agagtacacc ttaatgaagg
841 catatcgtgt ggcatgagca agaaactgcc tgctttacaa ttgccatttt tattttttta
901 aaataatact gatattttcc ccacctctca attgttttta atttttattt gtggatatac
961 cattttatta tgaaaatcta ttttatttat acacattcac cactaaatac acacttaata
1021 ccactaaaat ttatgtggtt tactttaagc gatgccatct ttcaaataaa ctaatctagg
1081 tctagacaga aagaaatgga tagagacttg acacaaattt atgaaagaaa attgggagta
1141 ggaatgtgac cgaaaacaag ttgtgctaat gtctgttaga cttttcagta aaactaaagt
1201 aactgtatct gttcaactaa aaactctata ttagtttctt tgggaaacct ctcatcgtca
1261 aaactttatg ttcactttgc tgttgtagat agccagtcaa ccagcagtat tagtgctgtt
1321 ttcaaagatt taagctctat aaaattggga aattatctaa gatcattttc cctaagcatt
1381 gacacatagc ttcatctgag gtgagatatg gcagctgttt gtatctgcac tgtgtctgtc
1441 tacaaaaagt gaaaaataca gtgtttactt gaaattttaa ctttgtaact gcaagaattc
1501 cagttcagcc gggcgaggat tagtattatt tttaactctc cgtaagattt tcagtaccac
1561 caaattgttt tggatttttt ttctttcctc ttcacatacc agggttatta aaagtgtgct
1621 ttctttttac attatattac agttacaagg taaaattcct caactgctat ttatttattc
1681 cagcccagta ctataaagaa cgtttcacca taatgaccct ccagagctgg gaaacctacc
1741 acaagatcta aagttctggc tgtccattaa cctccaacta tggtctttat ttcttgtggt
1801 aatatgatgt gcctttcctt gcctaaatcc cttcctggtg tgtatcaaca ttatttaatg
1861 tcttctaatt cagtcatttt tttataagta tgtctataaa cattgaactt taaaaaactt
1921 atttatttat tccactactg tagcaattga cagattaaaa aaatgtaact tcataatttc
1981 ttaccataac ctcaatgtct tttttaaaaa ataaaattaa aaatgaaaag agaaaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aa
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