LOCUS BC095428 1439 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1, mRNA (cDNA clone MGC:110965 IMAGE:30709297), complete cds. ACCESSION BC095428 VERSION BC095428.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1439) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1439) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-MAY-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Thompson Lab, University of WI cDNA Library Preparation: Chris Bradfield cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 220 Row: a Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18375504. FEATURES Location/Qualifiers source 1..1439 /db_xref="H-InvDB:HIT000335221" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:110965 IMAGE:30709297" /tissue_type="Embryonic Stem Cells, WA07 (H7) ES cell line, passage 22, 500-2Kb average insert size" /clone_lib="NIH_MGC_239" /lab_host="DH10B" /note="Vector: pCI-neo" gene 1..1439 /gene="APEX1" /gene_synonym="APE" /gene_synonym="APE1" /gene_synonym="APEN" /gene_synonym="APX" /gene_synonym="HAP1" /gene_synonym="REF-1" /gene_synonym="REF1" /db_xref="GeneID:328" /db_xref="HGNC:HGNC:587" /db_xref="MIM:107748" CDS 207..1163 /gene="APEX1" /gene_synonym="APE" /gene_synonym="APE1" /gene_synonym="APEN" /gene_synonym="APX" /gene_synonym="HAP1" /gene_synonym="REF-1" /gene_synonym="REF1" /codon_start=1 /product="APEX nuclease (multifunctional DNA repair enzyme) 1" /protein_id="AAH95428.1" /db_xref="GeneID:328" /db_xref="HGNC:HGNC:587" /db_xref="MIM:107748" /translation="MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPAL YEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSEN KLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVA EFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEI DLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSK NVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL" BASE COUNT 410 a 336 c 364 g 329 t ORIGIN 1 aaaaaaaaaa agaaaaaaaa aaaaacttct ttgtgctcgg gttaggagga gctaggctgc 61 catcgggccg gtgcagatac ggggttgctc ttttgctcat aagaggggct tcgctggcag 121 tctgaacggc aagcttgagc aacgcggtaa aaatattgct tcggtgggtg acgcggtaca 181 gctgcccaag ggcgttcgta acgggaatgc cgaagcgtgg gaaaaaggga gcggtggcgg 241 aagacgggga tgagctcagg acagagccag aggccaagaa gagtaagacg gccgcaaaga 301 aaaatgacaa agaggcagca ggagagggcc cagccctgta tgaggacccc ccagatcaga 361 aaacctcacc cagtggcaaa cctgccacac tcaagatctg ctcttggaat gtggatgggc 421 ttcgagcctg gattaagaag aaaggattag attgggtaaa ggaagaagcc ccagatatac 481 tgtgccttca agagaccaaa tgttcagaga acaaactacc agctgaactt caggagctgc 541 ctggactctc tcatcaatac tggtcagctc cttcggacaa ggaagggtac agtggcgtgg 601 gcctgctttc ccgccagtgc ccactcaaag tttcttacgg cataggcgat gaggagcatg 661 atcaggaagg ccgggtgatt gtggctgaat ttgactcgtt tgtgctggta acagcatatg 721 tacctaatgc aggccgaggt ctggtacgac tggagtaccg gcagcgctgg gatgaagcct 781 ttcgcaagtt cctgaagggc ctggcttccc gaaagcccct tgtgctgtgt ggagacctca 841 atgtggcaca tgaagaaatt gaccttcgca accccaaggg gaacaaaaag aatgctggct 901 tcacgccaca agagcgccaa ggcttcgggg aattactgca ggctgtgcca ctggctgaca 961 gctttaggca cctctacccc aacacaccct atgcctacac cttttggact tatatgatga 1021 atgctcgatc caagaatgtt ggttggcgcc ttgattactt tttgttgtcc cactctctgt 1081 tacctgcatt gtgtgacagc aagatccgtt ccaaggccct cggcagtgat cactgtccta 1141 tcaccctata cctagcactg tgacaccacc cctaaatcac tttgagcctg ggaaataagc 1201 cccctcaact accattcctt ctttaaacac tcttcagaga aatctgcatt ctatttctca 1261 tgtataaaac taggaatcct ccaaccaggc tcctgtgata gagttctttt aagcccaaga 1321 ttttttattt gagggttttt tgttttttaa aaaaaaattg aacaaagact actaatgact 1381 ttgtttgaat tatccacatg aaaataaaga gccatagttt cagaaaaaaa aaaaaaaaa //