LOCUS BC095406 1900 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens H2A histone family, member Y, mRNA (cDNA clone
MGC:110894 IMAGE:30348703), complete cds.
ACCESSION BC095406
VERSION BC095406.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1900)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1900)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: k Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20336747.
FEATURES Location/Qualifiers
source 1..1900
/db_xref="H-InvDB:HIT000335199"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:110894 IMAGE:30348703"
/tissue_type="Placenta, pre-eclamptic"
/clone_lib="NIH_MGC_148"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1900
/gene="H2AFY"
/gene_synonym="H2A.y"
/gene_synonym="H2A/y"
/gene_synonym="H2AF12M"
/gene_synonym="H2AFJ"
/gene_synonym="MACROH2A1.1"
/gene_synonym="macroH2A1.2"
/gene_synonym="mH2A1"
/db_xref="GeneID:9555"
/db_xref="HGNC:HGNC:4740"
/db_xref="MIM:610054"
CDS 171..1289
/gene="H2AFY"
/gene_synonym="H2A.y"
/gene_synonym="H2A/y"
/gene_synonym="H2AF12M"
/gene_synonym="H2AFJ"
/gene_synonym="MACROH2A1.1"
/gene_synonym="macroH2A1.2"
/gene_synonym="mH2A1"
/codon_start=1
/product="H2A histone family, member Y"
/protein_id="AAH95406.1"
/db_xref="GeneID:9555"
/db_xref="HGNC:HGNC:4740"
/db_xref="MIM:610054"
/translation="MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVG
APVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIAS
GGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK
KQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINP
TNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHC
NSPVWGADKCEELLGKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAI
SSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN"
BASE COUNT 515 a 450 c 505 g 430 t
ORIGIN
1 ggagagcgcg ggccgcgcgg gcgggaagcg aagaggcggg cgggccagcg aggagcgcgg
61 agagaaaagg cgcgagcggc caggagggct caggccgaga caccttgcag ctgccgccgc
121 cgccaccgag ccgccgctgt gctcactgat ccgcctccag ggccaccgcc atgtcgagcc
181 gcggtgggaa gaagaagtcc accaagacgt ccaggtctgc caaagcagga gtcatctttc
241 ccgtggggcg gatgctgcgg tacatcaaga aaggccaccc caagtacagg attggagtgg
301 gggcacccgt gtacatggcc gccgtcctgg aatacctgac agcggagatt ctggagctgg
361 ctggcaatgc agcgagagac aacaagaagg gacgggtcac accccggcac atcctgctgg
421 ctgtggccaa tgatgaagag ctgaatcagc tgctaaaagg agtcaccata gccagtgggg
481 gtgtgttacc caacatccac cccgagttgc tagcgaagaa gcggggatcc aaaggaaagt
541 tggaagccat catcacacca cccccagcca aaaaggccaa gtctccatcc cagaagaagc
601 ctgtatctaa aaaagcagga ggcaagaaag gggcccggaa atccaagaag aagcagggtg
661 aagtcagtaa ggcagccagc gccgacagca caaccgaggg cacacctgcc gacggcttca
721 cagtcctctc caccaagagc ctcttccttg gccagaagct gaaccttatt cacagtgaaa
781 tcagtaattt agccggcttt gaggtggagg ccataatcaa tcctaccaat gctgacattg
841 accttaaaga tgacctagga aacacgctgg agaagaaagg tggcaaggag tttgtggaag
901 ctgtcctgga actccggaaa aagaacgggc ccttggaagt agctggagct gctgtcagcg
961 caggccatgg cctgcctgcc aagtttgtga tccactgtaa tagtccagtt tggggtgcag
1021 acaagtgtga agaacttctg ggaaagacag tgaaaaactg cttggccctg gctgatgata
1081 agaagctgaa atccattgca tttccatcca tcggcagcgg caggaacggt tttccaaagc
1141 agacagcagc tcagctgatt ctgaaggcca tctccagtta cttcgtgtct acaatgtcct
1201 cttccatcaa aacggtgtac ttcgtgcttt ttgacagcga gagtataggc atctatgtgc
1261 aggaaatggc caagctggac gccaactagg ctgagcaatg acagaaccag ctgcaccatg
1321 taccccacct tcagtttaaa agaaaaaaaa aatccccttc actcctactg ggaggtggga
1381 cccctttcat tttcagtttt gctcatctag ggaaaataag gctttggttt ccagtttaat
1441 tgtttttgac cttctaaaat gtttttatgt tagcactgat agttggcatt actgttgtta
1501 agcactgtgt tccagaccgt gtctgactta gtgtaaccta ggagatttta tagttttatt
1561 ttaatgaaac cctgattgac gcacagcagt ggggagaaca gcgtctttta cctgtcaccg
1621 aagccaggaa gccccgtttg taagcgtgtg ttgtggtgct ttattgtaca tcctccagtg
1681 gcgttctttt tactctaatg ttcttttggt ttcccccctc agaagaatca tgaatttgca
1741 acagacctaa tttttggtta ctttttgtct tattgatgga tttgaaaatg aaagatttaa
1801 taaggcaaag cagaatctgt tgtccttaat tatatttgca atttggaatt tgtgtgagtt
1861 gatttagtaa aatgttaaac cgttaaaaaa aaaaaaaaaa
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