LOCUS BC094879 3908 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens potassium channel tetramerisation domain containing 3,
mRNA (cDNA clone MGC:104932 IMAGE:3078971), complete cds.
ACCESSION BC094879
VERSION BC094879.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3908)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3908)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 199 Row: d Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46255025.
FEATURES Location/Qualifiers
source 1..3908
/db_xref="H-InvDB:HIT000335180"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104932 IMAGE:3078971"
/tissue_type="Lymph, normal germinal center B cells"
/clone_lib="NIH_MGC_50"
/lab_host="DH10B"
/note="Vector: pT7T3-Pac"
gene 1..3908
/gene="KCTD3"
/gene_synonym="NY-REN-45"
/db_xref="GeneID:51133"
/db_xref="HGNC:HGNC:21305"
CDS 257..2698
/gene="KCTD3"
/gene_synonym="NY-REN-45"
/codon_start=1
/product="potassium channel tetramerisation domain
containing 3"
/protein_id="AAH94879.1"
/db_xref="GeneID:51133"
/db_xref="HGNC:HGNC:21305"
/translation="MAGGHCGSFPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFF
SSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGI
TPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEAR
GNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQ
VFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFS
LGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNN
GSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGT
SSGAVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTVT
RFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPIT
NKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQM
WDLTTAMDMVNKSEDKGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSHLRES
NSSLQLQHHDTTHEAATYGSMRPYRESPLLARARRTESFHSYRDFQTINLNRNVERAV
PENGNLGPIQAEVKGATGECNISERKSPGVEIKSLRELDSGLEVHKIAEGFSESKKRS
SEDENENKIEFRKKGGFEGGGFLGRKKVPYLASSPSTSDGGTDSPGTASPSPTKTTPS
PRHKKSDSSGQEYSL"
BASE COUNT 1168 a 750 c 893 g 1097 t
ORIGIN
1 cccggcggcc tggaggccgc gaaaggtgga ggccgggccg cccttgtgca ccgcaggatt
61 gacccgggaa ggggcagaag ctagcgagcc ccgcccggcc gccgggaagg tgggggaagc
121 cccgtgcacc ccccgccctc cggccgccgc cgccccgctg gccctgcagc cgtcgccgct
181 gcctcgggct acagccccgg gctctgcggt cccggctggg gaaggagggc ggcgagcgcg
241 tccggagccg ccggagatgg cgggagggca ctgcggcagc ttccccgcgg cggcggccgg
301 cagcggcgag atcgtccaac tgaacgtagg ggggaccaga tttagtacct caagacaaac
361 tcttatgtgg attccagatt cttttttttc cagtttgctg agtgggagaa tttcaacact
421 tcgagatgaa actggtgcta tatttattga tagagatcca gcagcatttg cacccatttt
481 aaattttctt cggacaaaag aactagactt aaggggagtg agtattaatg ttctcaggca
541 tgaagcagaa ttttacggga tcactccatt agtaagaagg cttctcttat gtgaagaatt
601 ggagcgttcc tcttgtggca gtgtcctttt tcatggttac ttgcccccac caggtattcc
661 tagtcgtaaa ataaacaaca cagtcagatc tgctgattct aggaatggtc taaattctac
721 agaaggtgaa gcccggggaa atggtacaca gcctgttctc tctggaacgg gagaagaaac
781 tgttaggcta ggatttcctg tggatccacg aaaggtgcta atagtagctg gccatcacaa
841 ctggattgta gctgcatatg cccattttgc tgtgtgttac agaatcaaag aatcttcagg
901 atggcagcaa gtgtttacga gcccatattt ggattggact atcgaacgag tagctttaaa
961 tgcaaaggtg gttggagggc cacatggaga caaagacaaa atggttgctg ttgcctcaga
1021 gagtagcatc atcttgtgga gtgttcagga tgggggaagt ggaagtgaaa ttggagtgtt
1081 cagcctgggt gttcctgtag atgctctctt ctttattggt aaccagttgg tggccacgag
1141 tcatacaggg aaagtgggag tgtggaatgc tgtcactcag cactggcagg ttcaagatgt
1201 tgttcctata actagttatg acactgctgg atcattcctt ctgcttggat gtaacaatgg
1261 atcaatatat tacatagata tgcagaagtt ccccttgcga atgaaagata atgatcttct
1321 tgtaactgaa ctgtatcatg atccttcaaa tgatgctatt actgctctga gtgtttacct
1381 cacacccaaa acaagtgtca gtggtaactg gatcgagatc gcctatggta cgagctctgg
1441 agcagtacga gtgattgtac aacacccaga gacagttggg tcaggtcctc agctttttca
1501 gactttcaca gttcaccgaa gtcccgtaac aaaaatcatg ctatcagaga agcatcttgt
1561 atcagtctgt gcagataata atcatgtccg gacgtggaca gtaacacgat tcagaggaat
1621 gatctctact cagccaggtt ctactccttt agcgtcattc aagatactat ccctggagga
1681 gacagaaagt catggtagct attcctctgg aaatgacata ggaccttttg gagagcgaga
1741 cgatcaacag gtgtttatcc agaaagttgt tcccatcacc aacaaactat ttgtaagact
1801 ctcatcgact ggaaaaagaa tatgtgagat ccaggctgtt gactgtacta caatatcctc
1861 atttacagtg agggaatgtg agggatccag taggatgggc tcaagaccaa ggcgctactt
1921 gttcacaggc catacaaatg gcagtattca aatgtgggat ctgaccactg ctatggatat
1981 ggttaacaaa agtgaagata agggtggtcc aaccgaagaa gagctactca aattactcga
2041 tcaatgtgat ttgagcacat ctcgctgtgc tactcctaac atcagtccag caacttccgt
2101 agttcagcat agccacttac gagaatcaaa ttctagcctt cagcttcagc accatgatac
2161 cacccatgaa gcagctactt acggttccat gaggccttac agagaaagtc ctttattagc
2221 aagggcaaga aggactgaga gctttcacag ttatagggac ttccagacta ttaatttgaa
2281 cagaaatgta gaaagagctg tccctgaaaa tggtaacttg ggtccaatac aagctgaagt
2341 gaaaggggca acaggggaat gtaatatatc tgagagaaag tctcctggag tagaaataaa
2401 aagtttgaga gaattggata gtggattgga agtgcataaa atagctgaag gtttttcaga
2461 atccaagaaa aggtcatcag aagatgaaaa tgaaaataaa atagagttta ggaagaaagg
2521 aggatttgaa gggggaggat tccttggaag aaagaaagtt ccctatctgg cgtcatcacc
2581 aagtacttcc gatggaggaa ctgactcacc tggtactgcg tccccatctc ctacaaagac
2641 tactccatct cctcggcata aaaaaagtga ttcttcaggt caggagtaca gcttgtgaaa
2701 actcaccaaa atgaatagtt gtttcgttac atttagatga aagttaaact ttactgaatt
2761 tcagtacatt agtttttaca ctaaaacttt acaagataaa attggacttc atttagtatc
2821 tttttaacag aattacttgg aataatgaga tacaataatc atatctcttt tgacattttg
2881 gaaatttttt taattttaca agtacattta acagatcatt tataaagcag gagtccattt
2941 taacacttac cgactttttt tggtttggaa acatattacc acgtcttaat aggatggtgc
3001 ccatataggt gagcatccct ttagatcatg ggaaccagca gactgcattc ctaatcttca
3061 ttatgcctga gacttgtctt acaatgttac ctttaagtga atcacataat tgtctttgga
3121 acttggtctc ccaacactta ttgtgattgc aaagtgttta ccagatattt gatgaggtgc
3181 tatgtttgtg aaaaacatat catgtaattc aaaaacacta ttgatattga ataccagata
3241 ccactatgta gtaagtcttt taggatgatt ttaatttagt cgtgcgtcat tttctgattc
3301 tcatcattgg gagatcttaa atcttagcaa gcattagcaa tattaaatgc caaaattcca
3361 ttgaaacttt caagttggag caattgtctg tgtttgaaaa gatgaaataa aaataataat
3421 caagggcaaa gctttgagtg cccagaaggg aaagctgtac cagttgctaa cctgtcttgt
3481 ttcaggagcc accatgtttt tttttcagtg ttaacaacaa tcatgataat taaattaaaa
3541 cactagtttg ttcacttgta ggactgcagt tctgaatttt gggttaaagg ttttggctgc
3601 tgtaagaatg tgaatttgaa tgtattttga attgtaagag caaaataacg tttttgtaca
3661 attttttttc atttaattgg aatgatcttc aggtttctac aaatagggta attgtaaatt
3721 taaagcatta gcatttattg gtgaataatg tatatatccc cattccaaga aatataagtg
3781 agtgaagttg aaataaaatc tttaaaattt actatattgc cagtggtttc acaacagttc
3841 tcttgtattt atttatcaat taaatcaaat aaaaatgatt atgtcaaaaa aaaaaaaaaa
3901 aaaaaaaa
//