LOCUS BC094759 2493 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens synuclein, alpha interacting protein, mRNA (cDNA clone
MGC:104635 IMAGE:4838145), complete cds.
ACCESSION BC094759
VERSION BC094759.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2493)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2493)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: c Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4885602.
FEATURES Location/Qualifiers
source 1..2493
/db_xref="H-InvDB:HIT000335060"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104635 IMAGE:4838145"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2493
/gene="SNCAIP"
/gene_synonym="SYPH1"
/db_xref="GeneID:9627"
/db_xref="HGNC:HGNC:11139"
/db_xref="MIM:603779"
CDS 187..1998
/gene="SNCAIP"
/gene_synonym="SYPH1"
/codon_start=1
/product="SNCAIP protein"
/protein_id="AAH94759.1"
/db_xref="GeneID:9627"
/db_xref="HGNC:HGNC:11139"
/db_xref="MIM:603779"
/translation="MTYLIQSHHSRRSQNCAEDVIRKTKTDQNGQLECVRWMVSETEA
IAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQDGNSAVHVASQHG
YLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLVVVETCMSLASQVVKLT
KQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSSPASRKSQWKSPDADDDSV
AKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLLGKEISENVCTQEKLSLEF
QDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDSNNSEDPKTTPVRKADRPR
PQPIVESVESMGSAESLHLMIKKHTLASGGRRFPFSIKASKSLDGHSPSPTSESSEPD
LESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKRRTSQNLKLRV
TFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQLKRPFGAFRSIMETLSGN
QNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKGKNKAEMYSSCINLSSNML
IEEHLCNDTRHNDINRKMKKSYSIKHIAEPESKELFL"
BASE COUNT 753 a 594 c 575 g 571 t
ORIGIN
1 gggctgaggc tgttctgctc ctgccgctgc ggtccgtcgg tcggtcagtc agtcccttcg
61 cgctcctgag ccgccggcgc gccgggcgcc ccgggaattt ataagtattt gaccgtactc
121 aaaatgtgca aggaagaata atggaagccc ctgaatacct tgatttggat gaaattgact
181 ttagtgatga catatcttat tcagtcacat cactcaagac gatcccagaa ctgtgccgaa
241 gatgtgatac gcaaaacgaa gacagatcag aatggtcagt tggagtgcgt acgctggatg
301 gtgagcgaaa cagaagccat tgcagaactg agttgttcta aggattttcc aagccttatt
361 cattacgcag gttgctatgg ccaggaaaag attcttctgt ggcttcttca gtttatgcaa
421 gaacagggca tctcgttgga tgaagtagac caggatggca acagtgccgt tcacgtagcc
481 tcacagcatg gctaccttgg atgcatacag accttggttg aatatggagc aaatgtcacc
541 atgcagaacc acgctgggga aaagccctcc cagagcgccg agcggcaggg gcacaccctg
601 tgctccaggt acctggtggt ggtggagacc tgcatgtcgc tggcctctca agtggtgaag
661 ttaaccaagc agctaaagga acaaacagta gaacgtgtca cgctgcagaa ccaactccaa
721 caatttctag aagcccagaa atcagagggc aagtcactcc cttcttcacc cagttcacca
781 tcctcacctg cctccagaaa gtcccagtgg aaatctccag atgcagatga tgattctgta
841 gccaaaagca agccaggagt ccaagagggg attcaggttc ttggaagcct gtcagcctcc
901 agccgggcta gacccaaagc aaaagatgaa gattctgata aaatcttacg ccagttattg
961 ggaaaggaaa tctcagaaaa tgtctgcacc caggaaaaac tgtccttgga attccaggat
1021 gctcaggctt cctctagaaa ttctaaaaag atcccactgg agaagaggga actgaagtta
1081 gccaggctga gacagctgat gcagaggtca ctgagtgagt ctgacacaga ctccaacaac
1141 tctgaggacc ccaagactac cccagtgagg aaggctgacc gaccaaggcc gcagcccatt
1201 gtagaaagcg tagagagtat gggcagcgca gaaagcctgc acctgatgat taagaaacac
1261 accttggcat cagggggacg caggtttcct ttcagcatca aggcctccaa atccctggat
1321 ggccacagcc catctcccac ctcagagagc agcgaaccag acttagaatc ccagtatcca
1381 ggctcaggga gtattcctcc aaaccagccc tctggtgacc ctcagcagcc cagccctgac
1441 agtactgctg cccagaaagt tgccacaagt cccaagagtg ccctcaagtc tccatcttcc
1501 aagcgtagga catctcagaa cttaaaactg agagttacct ttgaggagcc tgtggtgcag
1561 atggagcagc ctagccttga actgaatgga gaaaaagaca aagataaggg caggactctc
1621 cagcggacct ccacaagtaa cgaatcgggg gatcaactga aaaggccttt tggagccttt
1681 cgatctatca tggagacact aagtggcaac caaaacaata ataataacta ccaggcagcc
1741 aaccagctga aaacctctac attgcccttg acctcacttg ggaggaagac agatgccaag
1801 ggaaaccctg ccagctccgc tagcaaagga aagaataagg cagaaatgta cagcagctgc
1861 atcaatcttt cctctaacat gctgattgaa gagcatctgt gtaacgacac acggcataat
1921 gacatcaata gaaaaatgaa gaaatcctac agcataaagc acattgctga gccagagtca
1981 aaagaactct tcttgtaaat cactttttaa attttctctc actgatgccc tttggaaatt
2041 attggaaatt tctggactat cctctttgga aagagaacca tgaaaacaat gcctcaccag
2101 cagaagaaca gaatatcagg atgccttaaa tttatagtag tagactgtaa aagattcatt
2161 ttggggtgat atctgtatat ataacttgtt tttttaaaag atgccgttta aaagcatgat
2221 tgggaaaatg tatgtttttt aagagtagat tgattcaccc tacccacagg acattcacca
2281 agccactgat accattttat atttcatcaa ttgcatgagt atttgctaat gttgattgaa
2341 cctccctttc cccataatgt gggcagattt ggctcagctc cttcatgaga tcaggtcagt
2401 ggtattgttt ctgtcaagag tgttttttct gtcatttcta ctttttgtat aaaggaaata
2461 aaacaatgtt aacagccaaa aaaaaaaaaa aaa
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