LOCUS BC093879 2620 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens protocadherin gamma subfamily B, 5, mRNA (cDNA clone MGC:120914 IMAGE:7939724), complete cds. ACCESSION BC093879 VERSION BC093879.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2620) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2620) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Ambion cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 1 Row: k Column: 18. FEATURES Location/Qualifiers source 1..2620 /db_xref="H-InvDB:HIT000334854" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:120914 IMAGE:7939724" /tissue_type="Brain, PCR rescued clones" /clone_lib="NIH_MGC_307" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: GTGCTCCA" gene 1..2620 /gene="PCDHGB5" /gene_synonym="PCDH-GAMMA-B5" /db_xref="GeneID:56101" /db_xref="HGNC:HGNC:8712" /db_xref="MIM:606302" CDS 92..2548 /gene="PCDHGB5" /gene_synonym="PCDH-GAMMA-B5" /codon_start=1 /product="protocadherin gamma subfamily B, 5" /protein_id="AAH93879.1" /db_xref="GeneID:56101" /db_xref="HGNC:HGNC:8712" /db_xref="MIM:606302" /translation="MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKG SVVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPAC ALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDA DIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGG HPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSE ITYSFYRTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQ DENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIIS SSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQ ASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSG VVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPD GSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRT ARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQA ELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYS QGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPE LVSFIYVYSFSLPTQFSVFT" BASE COUNT 630 a 700 c 689 g 601 t ORIGIN 1 gcccgttcgg agatccaaaa atctacaata cagaggttat ttgtaacctg gcgtctccag 61 gctggtgagc aagctgagga gagcaagagg gatggggagc ggcgccgggg agctgggccg 121 ggctgagagg ctgccagtgc tctttctctt cctgctgtct ttgttctgcc cggcgctctg 181 tgagcagatc cgctacagga ttcccgagga aatgcccaag ggctccgtag tggggaacct 241 cgccacggac ctggggttca gcgtccagga gttaccgact cgaaaactgc gcgtcagttc 301 ggagaagcct tacttcaccg tgagcgcaga gagcggggag ttgcttgtga gcagcaggct 361 agacagggag gagatatgcg ggaagaagcc agcttgtgct ctggaatttg aggctgttgc 421 tgaaaatcca ctgaactttt atcacgtgaa tgtggagatc gaggacatta atgaccacac 481 gccaaaattc acgcaaaatt cctttgagct gcaaataagt gagtctgcac agcctggcac 541 aagatttata ctagaagtag cagaagatgc agatattggc ttaaactctc tgcagaagta 601 taaactctct cttaacccaa gtttctcatt aataattaag gagaaacagg atggtagtaa 661 atacccggaa ctggcactgg agaaaacctt agaccgggaa caacagagtt accatcgttt 721 agtcctgact gccttggacg gtggacatcc acccctaagc ggcaccactg agctccggat 781 ccaggtaacc gacgccaatg ataatccccc ggtattcaac cgagacgtgt acagagtcag 841 ccttcgggaa aacgtgccac caggcaccac tgtgttgcaa gtgtcagcca ctgaccaaga 901 cgagggcatc aactcagaaa ttacttattc cttctacaga accgggcaaa tctttagtct 961 gaattcaaag agcggagaaa ttaccactca aaagaaactg gattttgaag agaccaagga 1021 atattcaatg gttgtagaag ggagggatgg tggtggactg gttgcacaat gtacagttga 1081 aattaatatt caagatgaaa atgacaatag cccagaagtt acattccatt ctctacttga 1141 aatgattctg gaaaacgcgg tgcctggaac actaattgct ttgatcaaaa tacatgacca 1201 agattctggg gaaaatgggg aggttaattg tcaattacaa ggcgaagtcc cttttaagat 1261 tatctcttca tccaaaaatt cgtataagtt ggtaacagat ggaaccctag accgagagca 1321 aaccccggag tacaatgtca ccatcacagc cacagacagg ggcaagccgc ccctctcctc 1381 cagcataagc gtcatcctac atatcagaga cgtcaacgat aacgctccgg ttttccacca 1441 ggcgtcctac ttagtcagtg tacccgaaaa caaccctcct ggggcctcca tcgcgcaagt 1501 ctgcgcctcg gacctggact tggggttgaa cggccaagtc tcctactcta tcatggccag 1561 cgacctagag cctctggcac tggcctctta cgtgtccatg agcgcgcaaa gtggggtggt 1621 gttcgcgcag cgcgcctttg actacgagca gctgcgcacc ttcgaactca cactacaggc 1681 ccgcgaccag ggctcgcctg cgctcagcgc aaacgtgagc ctgcgcgtgt tggtgggcga 1741 ccgaaacgac aacgcaccgc gggtgctgta ccccgcgctg ggtcccgacg gctctgcgct 1801 cttcgatatg gtgccgcgcg ctgcagagcc cggctacctg gtgaccaagg tagtggccgt 1861 ggacgcagac tcaggacaca acgcctggct gtcctaccac gtgctgcagg ctagcgagcc 1921 cgggctcttc agcctggggc tgcgcacagg agaggtgcgc acagcgcgtg ccttgggcga 1981 cagggacgcg gcccgccagc gcctgctggt tgctgtgcgt gatggtggac agccgccact 2041 ctccgccacc gccacgctgc acttggtctt tgctgacagc ttgcaggagg tgctgccgga 2101 tatcactgac cgccctgtac cctctgaccc ccaggctgag ctgcagtttt acctagtggt 2161 ggccttggcc ttgatctcag tgctcttcct cctggccgtg attctggccg ttgccttgcg 2221 cctgcgacgc tcctccagcc ctgccgcctg gagctgcttc caacctggtc tctgtgtcaa 2281 gtctggacct gtggttcccc ccaactacag tcaggggact ttgccttatt cctacaacct 2341 atgtgttgca catacaggaa agacggagtt taatttccta aaatgtagtg agcaattgag 2401 ttcaggacaa gacatacttt gtggtgattc atctggggcc ttatttccac tttgtaattc 2461 cagcgagtcg acttcccatc ctgagttggt gagtttcatt tatgtctatt ctttttcatt 2521 acccacccaa ttttctgtat ttacatgaaa ctatcgtaca ttttcaagtc caatgagttg 2581 tcttagggaa gtcagagctg ctcagaaagc tgtcctacca //