LOCUS BC093877 2618 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily B, 5, mRNA (cDNA clone
MGC:120912 IMAGE:7939722), complete cds.
ACCESSION BC093877
VERSION BC093877.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2618)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2618)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: k Column: 16.
FEATURES Location/Qualifiers
source 1..2618
/db_xref="H-InvDB:HIT000334852"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:120912 IMAGE:7939722"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_307"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CAGTGACG"
gene 1..2618
/gene="PCDHGB5"
/gene_synonym="PCDH-GAMMA-B5"
/db_xref="GeneID:56101"
/db_xref="HGNC:HGNC:8712"
/db_xref="MIM:606302"
CDS 92..2548
/gene="PCDHGB5"
/gene_synonym="PCDH-GAMMA-B5"
/codon_start=1
/product="protocadherin gamma subfamily B, 5"
/protein_id="AAH93877.1"
/db_xref="GeneID:56101"
/db_xref="HGNC:HGNC:8712"
/db_xref="MIM:606302"
/translation="MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKG
SVVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPAC
ALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDA
DIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGG
HPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSE
ITYSFYRTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQ
DENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIIS
SSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQ
ASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSG
VVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPD
GSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRT
ARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQA
ELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYS
QGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPE
LVSFIYVYSFSLPTQFSVFT"
BASE COUNT 629 a 699 c 689 g 601 t
ORIGIN
1 gcccgttcgg agatccaaaa atctacaata cagaggttat ttgtaacctg gcgtctccag
61 gctggtgagc aagctgagga gagcaagagg gatggggagc ggcgccgggg agctgggccg
121 ggctgagagg ctgccagtgc tctttctctt cctgctgtct ttgttctgcc cggcgctctg
181 tgagcagatc cgctacagga ttcccgagga aatgcccaag ggctccgtag tggggaacct
241 cgccacggac ctggggttca gcgtccagga gttaccgact cgaaaactgc gcgtcagttc
301 ggagaagcct tacttcaccg tgagcgcaga gagcggggag ttgcttgtga gcagcaggct
361 agacagggag gagatatgcg ggaagaagcc agcttgtgct ctggaatttg aggctgttgc
421 tgaaaatcca ctgaactttt atcacgtgaa tgtggagatc gaggacatta atgaccacac
481 gccaaaattc acgcaaaatt cctttgagct gcaaataagt gagtctgcac agcctggcac
541 aagatttata ctagaagtag cagaagatgc agatattggc ttaaactctc tgcagaagta
601 taaactctct cttaacccaa gtttctcatt aataattaag gagaaacagg atggtagtaa
661 atacccggaa ctggcactgg agaaaacctt agaccgggaa caacagagtt accatcgttt
721 agtcctgact gccttggacg gtggacatcc acccctaagc ggcaccactg agctccggat
781 ccaggtaacc gacgccaatg ataatccccc ggtattcaac cgagacgtgt acagagtcag
841 ccttcgggaa aacgtgccac caggcaccac tgtgttgcaa gtgtcagcca ctgaccaaga
901 cgagggcatc aactcagaaa ttacttattc cttctacaga accgggcaaa tctttagtct
961 gaattcaaag agcggagaaa ttaccactca aaagaaactg gattttgaag agaccaagga
1021 atattcaatg gttgtagaag ggagggatgg tggtggactg gttgcacaat gtacagttga
1081 aattaatatt caagatgaaa atgacaatag cccagaagtt acattccatt ctctacttga
1141 aatgattctg gaaaacgcgg tgcctggaac actaattgct ttgatcaaaa tacatgacca
1201 agattctggg gaaaatgggg aggttaattg tcaattacaa ggcgaagtcc cttttaagat
1261 tatctcttca tccaaaaatt cgtataagtt ggtaacagat ggaaccctag accgagagca
1321 aaccccggag tacaatgtca ccatcacagc cacagacagg ggcaagccgc ccctctcctc
1381 cagcataagc gtcatcctac atatcagaga cgtcaacgat aacgctccgg ttttccacca
1441 ggcgtcctac ttagtcagtg tacccgaaaa caaccctcct ggggcctcca tcgcgcaagt
1501 ctgcgcctcg gacctggact tggggttgaa cggccaagtc tcctactcta tcatggccag
1561 cgacctagag cctctggcac tggcctctta cgtgtccatg agcgcgcaaa gtggggtggt
1621 gttcgcgcag cgcgcctttg actacgagca gctgcgcacc ttcgaactca cactacaggc
1681 ccgcgaccag ggctcgcctg cgctcagcgc aaacgtgagc ctgcgcgtgt tggtgggcga
1741 ccgaaacgac aacgcaccgc gggtgctgta ccccgcgctg ggtcccgacg gctctgcgct
1801 cttcgatatg gtgccgcgcg ctgcagagcc cggctacctg gtgaccaagg tagtggccgt
1861 ggacgcagac tcaggacaca acgcctggct gtcctaccac gtgctgcagg ctagcgagcc
1921 cgggctcttc agcctggggc tgcgcacagg agaggtgcgc acagcgcgtg ccttgggcga
1981 cagggacgcg gcccgccagc gcctgctggt tgctgtgcgt gatggtggac agccgccact
2041 ctccgccacc gccacgctgc acttggtctt tgctgacagc ttgcaggagg tgctgccgga
2101 tatcactgac cgccctgtac cctctgaccc ccaggctgag ctgcagtttt acctagtggt
2161 ggccttggcc ttgatctcag tgctcttcct cctggccgtg attctggccg ttgccttgcg
2221 cctgcgacgc tcctccagcc ctgccgcctg gagctgcttc caacctggtc tctgtgtcaa
2281 gtctggacct gtggttcccc ccaactacag tcaggggact ttgccttatt cctacaacct
2341 atgtgttgca catacaggaa agacggagtt taatttccta aaatgtagtg agcaattgag
2401 ttcaggacaa gacatacttt gtggtgattc atctggggcc ttatttccac tttgtaattc
2461 cagcgagtcg acttcccatc ctgagttggt gagtttcatt tatgtctatt ctttttcatt
2521 acccacccaa ttttctgtat ttacatgaaa ctatcgtaca ttttcaagtc caatgagttg
2581 tcttagggaa gtcagagctg ctcagaaagc tgtcctac
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