LOCUS BC093873 2692 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily A, 10, mRNA (cDNA clone
MGC:120908 IMAGE:7939718), complete cds.
ACCESSION BC093873
VERSION BC093873.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2692)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2692)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: k Column: 12.
FEATURES Location/Qualifiers
source 1..2692
/db_xref="H-InvDB:HIT000334848"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:120908 IMAGE:7939718"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_307"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CAGGAACC"
gene 1..2692
/gene="PCDHGA10"
/gene_synonym="PCDH-GAMMA-A10"
/db_xref="GeneID:56106"
/db_xref="HGNC:HGNC:8697"
/db_xref="MIM:606297"
CDS 65..2617
/gene="PCDHGA10"
/gene_synonym="PCDH-GAMMA-A10"
/codon_start=1
/product="protocadherin gamma subfamily A, 10"
/protein_id="AAH93873.1"
/db_xref="GeneID:56106"
/db_xref="HGNC:HGNC:8697"
/db_xref="MIM:606297"
/translation="MAAQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELE
KGSFVGNISKDLGLAPRELAERGVRIVSRGRTQLFSLNPRSGSLVTAGRIDREELCAQ
SARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPE
AIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTA
SDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEG
ANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLAT
AKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILA
YLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADIN
DNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSY
ISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEI
LYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVG
EHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSF
ESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVS
GSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKNDPLSLL
DDSKFPIEDTPLVPVSFIFIFTFVKKKKIGFYFEVCGMMVESVNAKTLMSRI"
BASE COUNT 659 a 710 c 688 g 635 t
ORIGIN
1 ggaaccggtt gaaacacaca acgtgtccag tgaggacttt gcagaattct gtaaccagac
61 tacaatggcc gctcaaagga atcgctcaaa ggaatcaaag gattgcagcg ggctggtcct
121 gctctgcctt ttcttcggga ttccatggga ggctggagcc cggcagatct cctactcaat
181 tcctgaggaa ttagagaaag gctctttcgt gggcaacatc tccaaggact tgggtctggc
241 gccccgggag ctggcggagc gcggagtccg catagtctcc agaggtagga cgcagctttt
301 ctctctgaac ccgcgcagcg gcagcttggt caccgcgggc aggatagacc gggaggagct
361 ctgcgctcag agcgcgcggt gcgtggtgag ttttaatatc cttgtggaag acagggtgaa
421 actttttggg atagaaatag aagtaactga tatcaatgac aatgctccaa aattccaagc
481 agaaaatcta gacgtaaaaa ttaatgaaaa tgtcgctgcg ggaatgcgtt ttcctctccc
541 ggaagctatt gatccggatg tgggcgtgaa ctccctgcag agctatcagc tcagccccaa
601 taagcacttc tccctaagag ttcagagccg tgccaatggc gtcaagtacc cggagctggt
661 actggagcac tccctagatc gcgaggaaga ggccattcac cacctggtcc tcaccgcctc
721 cgacgggggt gaccctctcc gatctggcac tgtccttgtc agtgtgactg tcttcgatgc
781 aaatgacaac gcgccggtct tcaccttgcc agaataccga gtgagtgttc ctgagaattt
841 gcctgtgggc actcagctgc tgacagtcac agccaccgac agggacgaag gtgccaatgg
901 agaagtgaca tattcattcc gaaaattacc tgacacgcaa ttgttgaagt tccaactaaa
961 caaatatact ggagaaataa aaatatcaga aaatctagat tatgaagaaa ccggtttcta
1021 tgaaatagaa atacaagcag aagatggagg agcatatctt gcaactgcaa aagtgttgat
1081 tacagtagaa gatgtaaatg acaacagtcc agagctgacc atcacgtctc tatttagtcc
1141 agtgactgaa gattcacctc tgggaacagt cgtagccctt ttaaatgtgc atgatttaga
1201 ctctgagcag aatggacagg taacctgttc cattttggcg tatctaccat ttaaattaga
1261 aaagtccatt gacagttatt acagattggt gatacacaga gcccttgaca gggaacaggt
1321 atcctcttac aatatcacag tgacagccac agatggggga agtcctcctc tatcaacgga
1381 agctcacttt atgctacaag tggcagatat caatgacaac ccacctacct tctctcaagt
1441 ctcctacttt acctatatcc cagagaacaa cgccaggggt gcctccatct tctcagtgac
1501 agcgctggac ccggacagca aagagaatgc ccagattatt tactccctgg ctgaagacac
1561 catccagggg gtacctctgt cctcatacat atccatcaac tcagacactg gcgtcctgta
1621 tgcactcaga tccttcgact atgagcagtt tcatgagcta cagatgcagg tgacagccag
1681 cgacagcggg gatcctccac tcagcagcaa cgtgtcgttg agcctgtttg tgctggacca
1741 gaacgacaat gcgcccgaga tcctgtaccc cgccctcccc acagacggtt ccacaggcgt
1801 ggagctggcg ccccgctccg cagagcccgg ctacctggtg accaaggtgg tggcggtgga
1861 cagagactcc ggccagaacg cctggctgtc ctaccgtctg ctcaaggcca gcgagccggg
1921 actcttcgcg gtgggggagc acacgggcga ggtgcgcacg gcgcgagccc tgctggacag
1981 agacgcgctc aagcaaagcc tcgtagtggc cgtccaggac cacggccagc cccctctctc
2041 cgccactgtc acgctcaccg tggccgtggc cgacagcatc ccccaagtcc tggcggacct
2101 cggcagcttc gagtctccag ctaactctga aacctcagac ctcactctgt acctggtggt
2161 agcggtggcc gcggtctcct gcgtcttcct ggccttcgtc atcgtgctgc tggcgcacag
2221 gctgcggcgc tggcacaagt cacgcctgct gcaggcttca ggaggcggct tgacaggtgt
2281 gtccggctcg cactttgtgg gcgtggacgg ggttcgggct ttcctgcaga cctattccca
2341 cgaggtctct ctcaccgcgg actcgcgaaa gagtcacctg atcttccccc agcccaatta
2401 tgcggacacg ctcatcagcc aggagagctg tgagaaaaac gatcctttgt ctttgttaga
2461 tgattcgaag tttcctatag aggatacccc attggttcca gtgagtttta ttttcatttt
2521 tacttttgtt aaaaaaaaaa agattggttt ttactttgaa gtttgcggca tgatggtgga
2581 aagtgtaaat gctaaaacac tgatgagtag aatttgatgt ttattaaggt tttttttttt
2641 tttttttttt tttttacttt ctggtaaaat tcacctagtc tcaatcaagg cc
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