LOCUS BC093871 2574 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens protocadherin gamma subfamily A, 2, transcript variant
2, mRNA (cDNA clone MGC:120906 IMAGE:7939716), complete cds.
ACCESSION BC093871
VERSION BC093871.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2574)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2574)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: k Column: 10.
FEATURES Location/Qualifiers
source 1..2574
/db_xref="H-InvDB:HIT000334846"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:120906 IMAGE:7939716"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_307"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CGCGAAAC"
gene 1..2574
/gene="PCDHGA2"
/gene_synonym="PCDH-GAMMA-A2"
/db_xref="GeneID:56113"
/db_xref="MIM:606289"
CDS 52..2523
/gene="PCDHGA2"
/gene_synonym="PCDH-GAMMA-A2"
/codon_start=1
/product="protocadherin gamma subfamily A, 2, isoform 2
precursor"
/protein_id="AAH93871.1"
/db_xref="GeneID:56113"
/db_xref="MIM:606289"
/translation="MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSF
VGNIAKDLGLEPLALAEQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPC
LLNFNILLEDKLTIYSVEVEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDA
DVGENALQKYALNPNDHFSLDVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGG
DPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQ
VVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVI
VTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPF
KLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADINDNAP
AFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAEDTVQGAPLSSYISIN
SDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAPEILYPA
FPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGLHTG
EVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSA
IPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSSHF
VGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLL
EEEREETFSQVIYLFTTYVLASLLK"
BASE COUNT 596 a 728 c 673 g 577 t
ORIGIN
1 tccgcactgg atgctggaag ttgactcgga gaaaattgcg acaggaggga aatggcggct
61 ctgcaaaagt tgccacactg cagaaagctg gtcctgctgt gcttcctttt ggcgaccctg
121 tgggaggcca gggccgggca gattcgctat tctgtgcggg aagagatcga cagaggctcc
181 ttcgtaggca acatcgccaa ggacttgggt ttggagcccc tggcactggc agagcaggga
241 gtccgcatcg tctccagagg taggtcccag ctctttgctc tgaacccgcg aagcggcagc
301 ttggtcactg cgaacaggat agaccgggag gagctctgcg ctcagagcgc accctgtctg
361 ttgaatttta acattctgct ggaggataaa ttgactattt attcagtaga ggtggaaata
421 acagatatta acgataatgc ccctcgcttt ggagtagagg aactggagct aaaaatcagt
481 gaaaccacta cgccaggatt ccggattcct cttaagaatg cgcatgatgc agacgtaggt
541 gagaacgccc ttcagaagta cgcactcaac ccaaatgacc acttctccct ggacgtgcga
601 agaggagctg atgggaacaa gtacccagaa ctggtgctgg agcgctctct ggaccgcgag
661 gaagaggctg ttcaccacct cgttctcgtg gcttctgatg ggggtgaccc agtgctatct
721 ggcacctccc gcatctgcgt gaaggtcctg gatgcgaacg acaatgcgcc tgtttttaca
781 cagcccgagt accgcataag cattccggag aatacgctcg tgggcacccg gatactcacg
841 gtgaccgcca ctgacgcaga tgagggctac tacgctcaag tggtatattt tctagagaaa
901 agccctggag aaacctcaga ggtatttgag cttaagtcaa catctggaga actgacaatc
961 ataaaagatc tagattatga ggatgctaca ttccatgaaa ttgatattga agctcaggat
1021 ggtccgggcc ttctaaccag agcgaaggtt atcgtcacgg ttctggatgt gaatgacaat
1081 gccccagaat tttacatgac atctgctact agctcagttt ctgaagactc tcttccagga
1141 accataattg ggctttttaa tgtacatgat agagactctg ggcagaacgc attcaccacc
1201 tgttcactcc ccgaggatct tccttttaag ttagaaaagt cagtagacaa ttactaccga
1261 ctggttacaa ccagagccct tgacagggaa cagttttcct tttacaacat cactctaacc
1321 gctaaagatg gagggaaccc ctccctgtcc acggatgctc acattttgct ccaggtggca
1381 gacatcaacg acaacgcacc cgccttctcc cgcacatcct actccaccta cattcccgaa
1441 aacaacccca gaggagcctc tgtcttctca gtgacggccc atgaccccga cagcaacgac
1501 aatgctcatg taacttactc tttcgcggag gacactgttc agggggcacc cttatcctct
1561 tacatctcta tcaactccga cactggagta ctctatgcac tgcgctcctt tgattatgag
1621 cagttgcgag acttgcaagt gtgggtgata gcgcgggaca gcgggaaccc tccactcagt
1681 agcaatgtat cattaagcct gttcgtgctg gaccagaacg acaacgcgcc cgagatcctg
1741 taccctgcct tccccacaga cggttccact ggcgtggagc tggcgccccg ctccgcagag
1801 cccggctacc tggtgaccaa ggtggtggcg gtggacagag actcgggcca gaacgcctgg
1861 ctgtcttacc acctgctcaa ggccagcgag ccgggactct tctcggtggg tctgcacacg
1921 ggcgaggtgc gcacggcgcg agccctgctg gacagagacg cgctcaagca gagcctcgtg
1981 gtggccatcc aggaccacgg ccagccccct ctctccgcca ctgtcacgct caccgtggcc
2041 gtggccgaca ggatccccga catcctggcc gacctgggca gcctcgagcc ctccgccata
2101 cccaacgatt cggacctcac tctgtacctg gtggtggcgg tggccgcggt ctcctgcgtc
2161 ttcctggcct tcgtcatcgt gttgctggcg cacaggctgc ggcgctggca caagtcacgc
2221 ctgctgcagg cttcaggagg cagcttgaca ggcatgcaga gctcgcactt tgtgggcgtg
2281 gacggggttc gggctttcct gcagacctat tcccacgagg tctccctcac tgcggactcg
2341 cggaagagcc acctgatttt cccccagccc aactatgcgg acacgctcat cagccaggag
2401 agctgtgaga aaaaggattt tttatcagcg cctcaatctc tactcgaaga agaaagagaa
2461 gaaacgtttt ctcaggtaat ctatcttttc acaacatacg tactagctag tttgctgaag
2521 taattcactt acttgtttac tatatctatt ttgttcccca tatttccttg aggg
//