LOCUS BC093870 1396 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ectodysplasin A receptor, mRNA (cDNA clone MGC:120905
IMAGE:7939715), complete cds.
ACCESSION BC093870
VERSION BC093870.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1396)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1396)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: k Column: 9.
FEATURES Location/Qualifiers
source 1..1396
/db_xref="H-InvDB:HIT000334845"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:120905 IMAGE:7939715"
/tissue_type="Liver, PCR rescued clones"
/clone_lib="NIH_MGC_291"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: AGACTACA"
gene 1..1396
/gene="EDAR"
/gene_synonym="ED1R"
/gene_synonym="ED5"
/gene_synonym="EDA-A1R"
/gene_synonym="EDA1R"
/gene_synonym="EDA3"
/db_xref="GeneID:10913"
/db_xref="HGNC:HGNC:2895"
/db_xref="MIM:604095"
CDS 24..1370
/gene="EDAR"
/gene_synonym="ED1R"
/gene_synonym="ED5"
/gene_synonym="EDA-A1R"
/gene_synonym="EDA1R"
/gene_synonym="EDA3"
/codon_start=1
/product="ectodysplasin A receptor"
/protein_id="AAH93870.1"
/db_xref="GeneID:10913"
/db_xref="HGNC:HGNC:2895"
/db_xref="MIM:604095"
/translation="MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLC
QECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVL
TPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFP
GTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAP
ACCTSHPGKSVEAQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSEN
EQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKSATSNKSAGIQSRRKKILDVYA
NVCGVVEGLSPTELPFDCLEKTSRMLSSTYNSEKAVVKTWRHLAESFGLKRDEIGGMT
DGMQLFDRISTAGYSIPELLTKLVQIERLDAVESLCADILEWAGVVPPASQPHAAS"
BASE COUNT 317 a 414 c 411 g 254 t
ORIGIN
1 gccaggtgag cccttgggag aggatggccc atgtggggga ctgcacgcag acgccctggc
61 tccccgtcct ggtggtgtct ctgatgtgct cagcccgagc ggaatactca aactgcggtg
121 agaacgagta ctacaaccag actacggggc tgtgccagga gtgccccccg tgtgggccgg
181 gagaggagcc ctacctgtcc tgtggctacg gcaccaaaga cgaggactac ggctgcgtcc
241 cctgcccggc ggagaagttt tccaaaggag gctaccagat atgcaggcgt cacaaagact
301 gtgagggctt cttccgggcc accgtgctga caccagggga catggagaat gacgctgagt
361 gtggcccttg cctccctggc tactacatgc tggagaacag accgaggaac atctatggca
421 tggtctgcta ctcctgcctc ctggcacccc ccaacaccaa ggaatgtgtg ggagccactt
481 caggagcttc tgccaacttc cctggcacct cgggcagcag caccctgtct cccttccagc
541 acgcccacaa agaactctca ggccaaggac acctggccac tgccctgatc attgcaatgt
601 ccaccatctt catcatggcc atcgccatcg tcctcatcat catgttctac atcctgaaga
661 caaagccctc tgccccagcc tgttgcacca gccacccggg gaagagcgtg gaggcccaag
721 tgagcaagga cgaggagaag aaagaggccc cagacaacgt ggtgatgttc tctgagaagg
781 atgaatttga gaagctgaca gcaactccag caaagcccac caagagcgag aacgatgcct
841 catccgagaa tgagcagctg ctgagccgga gcgtcgacag tgatgaggag cccgcccctg
901 acaagcaggg ctccccggag ctgtgcctgc tgtcgctggt tcacctggcc agggagaagt
961 ctgccaccag caacaagtca gccgggattc aaagccggag gaaaaagatc ctcgatgtgt
1021 atgccaacgt gtgtggagtc gtggaaggtc ttagccccac ggagctgcca tttgattgtc
1081 tcgagaagac tagccgaatg ctcagctcca cgtacaactc tgagaaggct gttgtgaaaa
1141 cgtggcgcca cctcgccgag agcttcggcc tgaagaggga tgagattggg ggcatgacag
1201 acggcatgca actctttgac cgcatcagca cggcaggcta cagcatccct gagctactca
1261 caaaactggt gcagattgag cggctggatg ctgtggagtc cttgtgtgca gacatactgg
1321 agtgggcggg ggttgtgcca cctgcctccc agccacatgc tgcatcctga aaagcatgcc
1381 tgtgggctgt cctccc
//