LOCUS BC093746 2475 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens PDZ domain containing ring finger 4, mRNA (cDNA clone
MGC:120781 IMAGE:7939591), complete cds.
ACCESSION BC093746
VERSION BC093746.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2475)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2475)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On May 13, 2005 this sequence version replaced BC093746.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: f Column: 5.
FEATURES Location/Qualifiers
source 1..2475
/db_xref="H-InvDB:HIT000334721"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:120781 IMAGE:7939591"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_310"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: CCGTTCCC"
gene 1..2475
/gene="PDZRN4"
/gene_synonym="LNX4"
/gene_synonym="SAMCAP3L"
/db_xref="GeneID:29951"
/db_xref="HGNC:HGNC:30552"
/db_xref="MIM:609730"
CDS 56..2392
/gene="PDZRN4"
/gene_synonym="LNX4"
/gene_synonym="SAMCAP3L"
/codon_start=1
/product="PDZ domain containing ring finger 4"
/protein_id="AAH93746.2"
/db_xref="GeneID:29951"
/db_xref="HGNC:HGNC:30552"
/db_xref="MIM:609730"
/translation="MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNA
KEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDIC
PFLLSDSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYEEVELCRVSSQEKLGLTV
CYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDEC
KRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEE
EEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNSTSLKSKRDLGQSQ
DTLGSVELQYNESLVSGEYIDSDCIGNPDEDCERFRQLLELKCKIRNHGEYDLYYSSS
TIECNQGEQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWTLHDGGFR
NYNTSIDMQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVINL
TNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVS
EHIPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKC
SEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRY
WSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKK
RNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV"
BASE COUNT 782 a 530 c 661 g 502 t
ORIGIN
1 tgcctttcag ttctggggaa attagaagat ttgctctctc tctctgcttc ttagaatggg
61 ctgcaatttg tgcacttttc agaaaagaga ggaacactac aaactgctgt atgaagtttc
121 ccaggtcaat gggaaggatc tttcaaaggc cactcatgaa gaggcagtgg aagcttttcg
181 caatgccaag gagcccattg tggtgcaggt gttaaggcga acacctctta gtagaccagc
241 ctatgggatg gcttcagaag tgcagcttat gaatgccagc actcagacgg acatcacctt
301 cgaacacatc atggctctgg ccaagcttcg tccacctacc cctccagtgc cagacatctg
361 tccattcctg ctctcagaca gctgccattc tctacatcca atggagcatg aattttatga
421 ggacaatgag tatatttcca gcttgcctgc tgatgcagac agaacagaag actttgaata
481 tgaggaggtc gagttgtgtc gtgttagcag tcaagagaag ctgggcctga cagtctgtta
541 ccgaacagat gatgaagaag acaccggcat ttatgtcagc gaggttgacc caaatagcat
601 tgctgccaaa gacggccgga ttcgagaagg ggatcggatt ttgcaaataa atggggaaga
661 tgtccagaat cgagaagaag cagtggcctt gctgtctaac gatgagtgta agagaatcgt
721 gctgcttgtt gcaaggccag agattcagct ggatgaaggc tggctggaag atgaaaggaa
781 tgaattctta gaggagttaa acttggagat gttggaagaa gagcataatg aagcaatgca
841 gcccactgcc aatgaggtgg agcagccaaa aaagcaagaa gaagaagaag gcacaacaga
901 cactgcaaca tcctcatcca acaaccatga gaaggacagt ggagtaggac gtacagatga
961 aagcttgcga aatgatgaga gctcagagca ggagaatgca gccgaggacc ccaatagcac
1021 atctttgaag agcaagagag acctggggca gagccaagac actctgggaa gtgttgaact
1081 tcagtacaat gagagcctcg tatctggtga atacattgac tcagactgca ttggcaaccc
1141 agatgaggac tgtgaaagat tcaggcagct cttggagctc aaatgcaaga ttcgaaatca
1201 tggagagtat gacctgtatt actcaagcag cacaattgaa tgcaatcaag gggagcaaga
1261 gggagtggag catgagctac agttgcttaa tgaagaactg agaaacattg agcttgagtg
1321 tcagaatatc atgcaggctc acaggctcca gaaagtgaca gaccagtatg gagacatctg
1381 gacattgcat gatggaggat tccggaatta taacaccagc atagatatgc aaaggggaaa
1441 gctagatgac atcatggagc atccagaaaa gtctgacaag gacagttcta gtgcttacaa
1501 cacagctgag agctgcagaa gtactccgct cactgtagac cgttcccctg acagttccct
1561 tccaagggtg atcaacctca ccaataagaa aaacctgaga agcacaatgg cagccaccca
1621 gtcctcttcc ggacagagca gtaaagagtc gacctccacc aaagccaaaa ccactgagca
1681 aggttgtagc gctgaaagca aggagaaggt tttagaaggc agcaagcttc ctgatcaaga
1741 gaaggcagtc agcgaacaca tcccttacct ctctccttac cacagctcct catatagata
1801 tgcaaacatc ccagcacacg cccggcatta tcaaagctac atgcagttaa ttcaacagaa
1861 atctgcagtc gagtatgctc agagtcagct cagcttggtg agcatgtgca aggagtctca
1921 gaagtgttca gagcccaaga tggaatggaa ggtgaaaatt aggagcgacg ggacacggta
1981 catcacaaag agacccgtgc gagaccgaat cctgaaggaa cgtgccttaa agatcaagga
2041 agagcggagt ggcatgacca cagacgatga caccatgagc gagatgaaaa tggggcgcta
2101 ctggagcaaa gaggagagaa agcagcacct ggttagggcc aaagagcagc gccgtcgccg
2161 tgagttcatg atgcgaagca ggttagagtg tctcaaggag agccctcaga gcggcagtga
2221 gggcaagaag gagatcaata tcattgaact gagtcacaaa aagatgatga aaaagagaaa
2281 caagaaaatt ttggacaact ggatgacaat ccaagaactg atgacccatg gggccaagtc
2341 tccagatggc acgagagtcc ataatgcctt cttgtcggtg accactgtat gaccgaatga
2401 atggaatgca tgcgactgat tttaggagga tgctaccagt ttcggtagag tatgatcgcc
2461 tcgttcaatg tggcg
//