LOCUS BC093696 3664 bp mRNA linear HUM 26-APR-2005
DEFINITION Homo sapiens ubiquitination factor E4B (UFD2 homolog, yeast), mRNA
(cDNA clone MGC:120731 IMAGE:7939541), complete cds.
ACCESSION BC093696
VERSION BC093696.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3664)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3664)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: d Column: 3.
FEATURES Location/Qualifiers
source 1..3664
/db_xref="H-InvDB:HIT000334671"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:120731 IMAGE:7939541"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: ATCCTAAC"
gene 1..3664
/gene="UBE4B"
/gene_synonym="686"
/gene_synonym="E4"
/gene_synonym="HDNB1"
/gene_synonym="KIAA0684"
/gene_synonym="UBOX3"
/gene_synonym="UFD2"
/db_xref="GeneID:10277"
CDS 79..3600
/gene="UBE4B"
/gene_synonym="686"
/gene_synonym="E4"
/gene_synonym="HDNB1"
/gene_synonym="KIAA0684"
/gene_synonym="UBOX3"
/gene_synonym="UFD2"
/codon_start=1
/product="ubiquitination factor E4B"
/protein_id="AAH93696.1"
/db_xref="GeneID:10277"
/translation="MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAA
SAPGPSQSLGLNVHNMTPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSR
SQSMDIDGVSCEKSMSQVDVDSGIENMEVDENDRREKRSLSDKEPSSGPEVSEEQALQ
LVCKIFRVSWKDRDRDVIFLSSLSAQFKQNPKEVFSDFKDLIGQILMEVLMMSTQTRD
ENPFASLTATSQPIAAAARSPDRNLLLNTGSNPGTSPMFCSVASFGASSLSSLGASGG
ASNWDSYSDHFTIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQ
CISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFI
PILQGLALAAKECSLDSDYFKYPLMALGELCETKFGKTHPVCNLVASLRLWLPKSLSP
GCGRELQRLSYLGAFFSFSVFAEDDVKVVEKYFSGPAITLENTRVVSQSLQHYLELGR
QELFKILHSILLNGETREAALSYMAAVVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQ
QLSTKIKLETVDPTYIFHPRCRITLPNDETRVNATMEDVNDWLTELYGDQPPFSEPKF
PTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHRE
MLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRILDPAYPDITLPL
NSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFLVVMLCNQNYIRN
PYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYTDVEHTGATSE
FYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLE
SLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILT
KQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIY
LQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAK
NARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTL
TESMLEPVPELKEQIQAWMREKQNSDH"
BASE COUNT 974 a 936 c 862 g 892 t
ORIGIN
1 ccactctcct tcctcccgcc gtggtctcga gaacagaagg atctctcctt aacgcctttc
61 accattaaga ggaaagcgat ggaggagctg agcgctgatg agattcgacg gaggcgcctt
121 gcacgacttg ctggtggaca gacctctcag ccaaccaccc cactcacctc tccccagagg
181 gagaaccctc cggggcctcc catagcggca tcagccccag gaccctctca gagtcttggt
241 ctcaatgtcc acaacatgac cccagctacc tccccaatag gtgcatcagg agtagcccat
301 cgaagccaga gcagtgaagg agtcagttct ctcagcagct cgccctctaa tagccttgaa
361 acgcaatctc agtctctctc acgttcccag agcatggata tcgatggtgt ctcatgtgag
421 aaaagcatgt cccaggtgga tgtggattca ggaattgaaa acatggaggt tgatgaaaat
481 gatcgaagag aaaagcggag cctcagtgat aaggagcctt cctcgggccc tgaagtgtct
541 gaagagcagg ccttacagct ggtctgtaag atcttccgtg tctcttggaa ggaccgggac
601 agagatgtca tctttctttc ttctctttct gcacagttta agcagaaccc aaaagaagta
661 ttctccgatt ttaaggactt gattggccag attttaatgg aagtgctaat gatgtccact
721 cagaccagag atgaaaaccc atttgccagt ctgacagcca catcacagcc aattgctgca
781 gcagcacggt caccagacag aaatctcttg ctaaacactg gctccaatcc aggaacaagc
841 cccatgttct gcagcgtggc ttcctttggt gccagctctt tgtctagttt gggagcctct
901 ggtggagcaa gtaattggga ttcctacagt gaccatttca ccattgaaac ctgcaaagag
961 acagatatgc tgaactacct catcgagtgt ttcgaccgag ttggaataga ggaaaaaaaa
1021 gcaccaaaga tgtgcagcca gccagcagtc agccagcttc tgagcaacat ccgctcacag
1081 tgcatatccc atactgcttt agtactacaa ggctccctaa cacagcccag gtccttgcag
1141 cagccgtcct tcctagtgcc gtatatgctg tgtaggaatc tcccatatgg cttcattcag
1201 gaactggtga gaaccactca ccaggatgaa gaagtgttca agcagatatt tatccccatt
1261 ttacaaggcc tggctcttgc tgccaaagag tgctccctcg acagtgacta ctttaaatac
1321 cccctcatgg cactaggtga gctctgtgaa accaagtttg ggaagacaca ccctgtgtgc
1381 aatttggttg cttctttgcg gttgtggttg ccgaaatcct taagtcctgg ctgtgggcgg
1441 gagctgcaga gactctctta cttaggggct ttctttagct tctcagtctt tgcagaagat
1501 gatgttaaag tggttgaaaa atacttctca gggcctgcca ttaccctgga aaacactcgt
1561 gtggttagcc aatcattgca gcattactta gagctcggaa ggcaagagct ttttaagatt
1621 ctgcatagta ttttgttaaa tggcgaaacc cgtgaggctg ctctcagtta catggcggct
1681 gtcgtcaatg ccaatatgaa gaaagcacag atgcagacag atgatagatt ggtgtctaca
1741 gatggattta tgctgaattt cctttgggta ctgcagcagc taagtacaaa aatcaagtta
1801 gaaacagttg atcccacgta tatttttcac ccaagatgtc ggattactct tcccaatgat
1861 gagacgcgtg tgaatgcaac gatggaagat gtgaatgact ggctgactga actctatggc
1921 gatcagcctc cattttctga gccgaaattc cctacggagt gcttctttct caccctgcat
1981 gctcaccacc tctctattct gcctagttgc cgtcgctata tccgcagact ccgggctatc
2041 cgggagctca atagaactgt agaagatttg aaaaataatg aaagccaatg gaaagattcc
2101 ccactggcaa ctagacaccg cgaaatgctg aagcgctgta aaactcagct taagaaactg
2161 gtacggtgca aggcctgtgc tgatgctggc ctacttgacg agagcttcct gagaagatgt
2221 ctgaattttt atggccttct cattcagctg ctgctccgca tcctggaccc cgcatatccc
2281 gatataacac tgcctttaaa ttcagatgtc cccaaggtat ttgcagcgtt gcctgagttt
2341 tatgtagaag atgttgcaga atttttattt tttattgtac aatactctcc ccaggcgctt
2401 tatgagccct gtactcagga tattgtgatg ttccttgttg tgatgttgtg caaccagaac
2461 tacatccgaa acccatattt ggtggccaaa ctggtagaag tcatgtttat gaccaaccct
2521 gctgttcagc cacgaaccca gaagtttttt gaaatgattg agaaccatcc tctctccacc
2581 aagttgttgg taccttccct gatgaagttt tatacagatg ttgagcatac cggagccacc
2641 agtgagtttt atgacaagtt cacaattcgc tatcatatta gcaccatttt taaaagcctt
2701 tggcaaaaca tagctcacca tggcaccttt atggaggagt tcaactccgg gaagcagttt
2761 gttcgctata taaacatgtt gataaacgac acgacgtttt tgctcgatga aagtctggag
2821 tctctgaagc gaatccatga agtgcaggaa gagatgaaga acaaagaaca gtgggaccag
2881 ttgccccggg atcagcagca ggctcgtcag tctcagcttg ctcaggatga gcgtgtgtcc
2941 cgctcttacc tcgccctggc caccgaaacc gtggacatgt tccacatcct cacgaagcag
3001 gtccagaagc ccttcctcag accggagctt ggaccccgat tggctgcaat gctgaacttt
3061 aatcttcagc aactttgtgg ccccaagtgc cgtgacctga aagttgaaaa ccctgagaaa
3121 tacggctttg aaccaaagaa gctgttggac caactgacgg atatttactt acagctggac
3181 tgtgctcggt tcgcgaaagc cattgctgac gaccagagat cctacagtaa ggaattgttt
3241 gaagaagtta tttcaaagat gcggaaggca gggatcaaat ccacaatagc aatagaaaaa
3301 tttaagctgc tcgccgagaa agtggaggag atagtggcca agaacgcacg cgcagaaatc
3361 gactacagcg acgctcctga tgagttcaga gaccctctga tggacaccct catgacagac
3421 cccgtgcggc tgccctctgg caccatcatg gaccgctcca tcatcctgcg gcacctgctc
3481 aactccccca cggacccctt caaccggcag acgctgacag agagcatgct ggaaccagtg
3541 ccagaactga aagagcagat tcaggcgtgg atgagagaga aacagaacag cgatcactaa
3601 accgttccgc cgcccaccct ctgctagaca cagccaaggc caacgaggca agcagaagca
3661 gcgg
//