LOCUS BC093695 575 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens calcium channel, voltage-dependent, L type, alpha 1C
subunit, mRNA (cDNA clone IMAGE:7939540), complete cds.
ACCESSION BC093695
VERSION BC093695.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 575)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 575)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 1 Row: d Column: 2
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..575
/db_xref="H-InvDB:HIT000334670"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:7939540"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCTAATCA"
gene 1..575
/gene="CACNA1C"
/gene_synonym="CACH2"
/gene_synonym="CACN2"
/gene_synonym="CaV1.2"
/gene_synonym="TS"
/db_xref="GeneID:775"
/db_xref="HGNC:HGNC:1390"
/db_xref="MIM:114205"
CDS 99..482
/gene="CACNA1C"
/gene_synonym="CACH2"
/gene_synonym="CACN2"
/gene_synonym="CaV1.2"
/gene_synonym="TS"
/codon_start=1
/product="calcium channel, voltage-dependent, L type,
alpha 1C subunit"
/protein_id="AAH93695.1"
/db_xref="GeneID:775"
/db_xref="HGNC:HGNC:1390"
/db_xref="MIM:114205"
/translation="MCSAYPPTVTSVVEPLTSQGSIWEGEKSTHSIWGCCSSHISLPG
GMWGCLPPCPPSADVPPLRLSRCHLTQAAVQRQAGKPKPHYQGGPQPPESRFSRGYDL
RRLRGKTGGKEKSYNCQEWGTFPCP"
BASE COUNT 130 a 166 c 165 g 114 t
ORIGIN
1 tggggcaaat gtcagcacag agaggactgg gaggagaatg gaggcaagaa aagggcatat
61 tttgactccc tctgtgcctc ttcccagttc atggaaggat gtgttcagct tacccaccca
121 cagtgaccag tgtggtggag ccactgacat ctcaaggatc tatttgggaa ggtgagaaga
181 gtactcattc catctggggg tgttgttcca gccacatcag cctacctggt gggatgtggg
241 ggtgtctgcc accctgtccc ccctctgctg atgtccctcc cctcaggctg tccaggtgcc
301 acctgacaca ggctgctgtg caaaggcagg cggggaagcc caaacctcac taccagggag
361 gccctcagcc gccagagtcc aggttctcca gaggctacga tttgaggagg ttgaggggga
421 agacaggagg gaaagaaaag tcctacaact gtcaggaatg gggcaccttt ccctgtccct
481 aagcaaagct ccctcttccc actgccctcc ccagccccag ctccctgtcc tccccaacac
541 ctagtgagaa agacggtgcg tggaagggag tccca
//