LOCUS BC093074 939 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens thymocyte nuclear protein 1, mRNA (cDNA clone
MGC:111217 IMAGE:30717693), complete cds.
ACCESSION BC093074
VERSION BC093074.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 939)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 939)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Professor Miklos Palkovits
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 68 Row: d Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40806220.
FEATURES Location/Qualifiers
source 1..939
/db_xref="H-InvDB:HIT000334565"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:111217 IMAGE:30717693"
/tissue_type="Spinal cord"
/clone_lib="NIH_MGC_227"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..939
/gene="THYN1"
/gene_synonym="HSPC144"
/gene_synonym="MDS012"
/gene_synonym="MGC12187"
/gene_synonym="MY105"
/gene_synonym="THY28"
/gene_synonym="THY28KD"
/db_xref="GeneID:29087"
/db_xref="HGNC:HGNC:29560"
CDS 78..755
/gene="THYN1"
/gene_synonym="HSPC144"
/gene_synonym="MDS012"
/gene_synonym="MGC12187"
/gene_synonym="MY105"
/gene_synonym="THY28"
/gene_synonym="THY28KD"
/codon_start=1
/product="thymocyte nuclear protein 1"
/protein_id="AAH93074.1"
/db_xref="GeneID:29087"
/db_xref="HGNC:HGNC:29560"
/translation="MSRPRKRLAGTSGSDKGLSGKRTKTENSVEALAKVEDSNPQKTS
ATKNCLKNLSSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFL
RAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSM
VDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLS
LEEKEPS"
BASE COUNT 295 a 208 c 232 g 204 t
ORIGIN
1 ggcgcagcgg aggcggaccg cagtcgagtc tgcagagtgt tggaatcgtc cgcactaaag
61 tcccctgcag cgtgaccatg tcgagacccc ggaagaggct ggctgggact tctggttcag
121 acaagggact atcaggaaaa cgcaccaaaa ctgagaactc agttgaggca ttagctaaag
181 tggaggactc caaccctcag aagacttcag ccactaaaaa ctgtttgaag aatctaagca
241 gccactggct gatgaagtca gagccagaga gccgcctaga gaaaggtgta gatgtgaagt
301 tcagcattga ggatctcaaa gcacagccca aacagacaac atgctgggat ggtgttcgta
361 actaccaggc tcggaacttc cttagagcca tgaagctggg agaagaagcc ttcttctacc
421 atagcaactg caaagagcca ggcatcgcag gactcatgaa gatcgtgaaa gaggcttacc
481 cagaccacac acagtttgag aaaaacaatc cccattatga cccatctagc aaagaggaca
541 accctaagtg gtccatggtg gatgtacagt ttgttcggat gatgaaacgt ttcattcccc
601 tggctgagct caaatcctat catcaagctc acaaagctac tggtggcccc ttaaaaaata
661 tggttctctt cactcgccag agattatcaa tccagcccct gacccaggaa gagtttgatt
721 ttgttttgag cctggaggaa aaggaaccaa gttaactgag atactgctgc tggaatgggc
781 gagacattgc tgcaaagaag tcaagctttt ttcagacaaa aggtgtgagg gggcttgctt
841 ggtatgctta cctgggcttg tgtacctcag tggtttttgt gtactttttt caataaaata
901 tcaaagtcga aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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