LOCUS BC093011 1749 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens ATG5 autophagy related 5 homolog (S. cerevisiae), mRNA
(cDNA clone MGC:110866 IMAGE:30345897), complete cds.
ACCESSION BC093011
VERSION BC093011.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1749)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1749)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: k Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4757797.
FEATURES Location/Qualifiers
source 1..1749
/db_xref="H-InvDB:HIT000334502"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:110866 IMAGE:30345897"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1749
/gene="ATG5"
/gene_synonym="APG5"
/gene_synonym="ASP"
/gene_synonym="hAPG5"
/db_xref="GeneID:9474"
/db_xref="HGNC:HGNC:589"
/db_xref="MIM:604261"
CDS 281..1108
/gene="ATG5"
/gene_synonym="APG5"
/gene_synonym="ASP"
/gene_synonym="hAPG5"
/codon_start=1
/product="ATG5 autophagy related 5 homolog (S.
cerevisiae)"
/protein_id="AAH93011.1"
/db_xref="GeneID:9474"
/db_xref="HGNC:HGNC:589"
/db_xref="MIM:604261"
/translation="MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSY
LTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITV
HFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND
RFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDL
LKEVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD"
BASE COUNT 541 a 340 c 385 g 483 t
ORIGIN
1 gtattcgctg gataccagag ggcggaagtg cagcagggtt cagctccgac ctccgcgccg
61 gtgctttttg cggctgcgcg ggcttcctgg agccctgcta ccgcgtcccc gcaggacagt
121 gtgtcaggcg ggcagcttgc cccgccgccc caccggagcg cggaatctgg gcgtccccac
181 cagtgcgggg agccggaagg aggagccata gcttggagta ggtttggctt tggttgaaat
241 aagaatttag cctgtatgta ctgctttaac tcctggaaga atgacagatg acaaagatgt
301 gcttcgagat gtgtggtttg gacgaattcc aacttgtttc acgctatatc aggatgagat
361 aactgaaagg gaagcagaac catactattt gcttttgcca agagtaagtt atttgacgtt
421 ggtaactgac aaagtgaaaa agcactttca gaaggttatg agacaagaag acattagtga
481 gatatggttt gaatatgaag gcacaccact gaaatggcat tatccaattg gtttgctatt
541 tgatcttctt gcatcaagtt cagctcttcc ttggaacatc acagtacatt ttaagagttt
601 tccagaaaaa gaccttctgc actgtccatc taaggatgca attgaagctc attttatgtc
661 atgtatgaaa gaagctgatg ctttaaaaca taaaagtcaa gtaatcaatg aaatgcagaa
721 aaaagatcac aagcaactct ggatgggatt gcaaaatgac agatttgacc agttttgggc
781 catcaatcgg aaactcatgg aatatcctgc agaagaaaat ggatttcgtt atatcccctt
841 tagaatatat cagacaacga ctgaaagacc tttcattcag aagctgtttc gtcctgtggc
901 tgcagatgga cagttgcaca cactaggaga tctcctcaaa gaagtttgtc cttctgctat
961 tgatcctgaa gatggggaaa aaaagaatca agtgatgatt catggaattg agccaatgtt
1021 ggaaacacct ctgcagtggc tgagtgaaca tctgagctac ccggataatt ttcttcatat
1081 tagtatcatc ccacagccaa cagattgaag gatcaactat ttgcctgaac agaatcatcc
1141 ttaaatggga tttatcagag catgtcaccc ttttgcttca atcaggtttg gtggaggcaa
1201 cctgaccaga aacacttcgc tgctgcaagc cagacaggaa aaagattcca tgtcagataa
1261 ggcaactggg ctggtcttac tttgcatcac ctctgctttc ctccactgcc atcattaaac
1321 ctcagctgtg acatgaaaga cttaccggac cactgaaggt cttctgtaaa atataatgaa
1381 gctgaaacct ttggcctaag aagaaaatgg aagtatgtgc cactcgattt gtatttctga
1441 ttaacaaata aacaggggta tttcctaagg tgaccatggt tgaactttag ctcatgaaag
1501 tggaaacatt ggtttaattt tcaagagaat taagaaagta aaagagaaat tctgttatca
1561 ataacttgca agtaattttt tgtaaaagat tgaattacag taaacccatc tttccttaac
1621 gaaaatttcc tatgtttaca gtctgtctat tggtatgcaa tcttgtaact ttgataatga
1681 acagtgagag atttttaaat aaagcctcta aatatgtttt gtcatttaat aacaaaaaaa
1741 aaaaaaaaa
//