LOCUS BC092517 5246 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens DNA (cytosine-5-)-methyltransferase 1, mRNA (cDNA clone MGC:104992 IMAGE:3077831), complete cds. ACCESSION BC092517 VERSION BC092517.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5246) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5246) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-APR-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis M. Staudt, M.D., Ph.D. cDNA Library Preparation: M. Bento Soares, University of Iowa cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 199 Row: c Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4503350 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..5246 /db_xref="H-InvDB:HIT000334491" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:104992 IMAGE:3077831" /tissue_type="Lymph, normal germinal center B cells" /clone_lib="NIH_MGC_50" /lab_host="DH10B" /note="Vector: pT7T3-Pac" gene 1..5246 /gene="DNMT1" /gene_synonym="AIM" /gene_synonym="CXXC9" /gene_synonym="MCMT" /db_xref="GeneID:1786" /db_xref="HGNC:HGNC:2976" /db_xref="MIM:126375" CDS 359..4894 /gene="DNMT1" /gene_synonym="AIM" /gene_synonym="CXXC9" /gene_synonym="MCMT" /codon_start=1 /product="DNMT1 protein" /protein_id="AAH92517.1" /db_xref="GeneID:1786" /db_xref="HGNC:HGNC:2976" /db_xref="MIM:126375" /translation="MADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRA EPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRV TSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDRE ARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEK RRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQML TNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSA KPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAP IFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQ FVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDR GPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACK DMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQGKKKKQNKN RISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSS NGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAM EGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLAEMR QKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRK EPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVN KFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSM GGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIK LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNI LLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSF LSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQT RRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITV RDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARM RHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGK ACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLH PEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAK ARESASAKIKEEEAAKD" BASE COUNT 1405 a 1416 c 1452 g 973 t ORIGIN 1 gcgctgccgc cgccgcgtct gctgaagcct ccgagatgcc ggcgcgtacc gccccagccc 61 gggtgcccac actggccgtc ccggccatct cgctgcccga cgatgtccgc aggcggctca 121 aagatttgga aagagacagc ttaacagaaa aggaatgtgt gaaggagaaa ttgaatctct 181 tgcacgaatt tctgcaaaca gaaataaaga atcagttatg tgacttggaa accaaattac 241 gtaaagaaga attatccgag atttgtcctt ggagaacggt gctcatgctt acaaccggga 301 agtgaatgga cgtctagaaa acgggaacca agcaagaagt gaagcccgta gagtgggaat 361 ggcagatgcc aacagccccc ccaaacccct ttccaaacct cgcacgccca ggaggagcaa 421 gtccgatgga gaggctaagc gttcaagaga ccctcctgcc tcagcctccc aagtaactgg 481 gattagagct gaaccttcac ctagccccag gattacaagg aaaagcacca ggcaaaccac 541 catcacatct cattttgcaa agggccctgc caaacggaaa cctcaggaag agtctgaaag 601 agccaaatcg gatgagtcca tcaaggaaga agacaaagac caggatgaga agagacgtag 661 agttacatcc agagaacgag ttgctagacc gcttcctgca gaagaacctg aaagagcaaa 721 atcaggaacg cgcactgaaa aggaagaaga aagagatgaa aaagaagaaa agagactccg 781 aagtcaaacc aaagaaccaa cacccaaaca gaaactgaag gaggagccgg acagagaagc 841 cagggcaggc gtgcaggctg acgaggacga agatggagac gagaaagatg agaagaagca 901 cagaagtcaa cccaaagatc tagctgccaa acggaggccc gaagaaaaag aacctgaaaa 961 agtaaatcca cagatttctg atgaaaaaga cgaggatgaa aaggaggaga agagacgcaa 1021 aacgaccccc aaagaaccaa cggagaaaaa aatggctcgc gccaaaacag tcatgaactc 1081 caagacccac cctcccaagt gcattcagtg cgggcagtac ctggacgacc ctgacctcaa 1141 atatgggcag cacccaccag acgcggtgga tgagccacag atgctgacaa atgagaagct 1201 gtccatcttt gatgccaacg agtctggctt tgagagttat gaggcgcttc cccagcacaa 1261 actgacctgc ttcagtgtgt actgtaagca cggtcacctg tgtcccatcg acaccggcct 1321 catcgagaag aatatcgaac tcttcttttc tggttcagca aaaccaatct atgatgatga 1381 cccatctctt gaaggtggtg ttaatggcaa aaatcttggc cccataaatg aatggtggat 1441 cactggcttt gatggaggtg aaaaggccct catcggcttc agcacctcat ttgccgaata 1501 cattctgatg gatcccagtc ccgagtatgc gcccatattt gggctgatgc aggagaagat 1561 ctacatcagc aagattgtgg tggagttcct gcagagcaat tccgactcga cctatgagga 1621 cctgatcaac aagatcgaga ccacggttcc tccttctggc ctcaacttga accgcttcac 1681 agaggactcc ctcctgcgac acgcgcagtt tgtggtggag caggtggaga gttatgacga 1741 ggccggggac agtgatgagc agcccatctt cctgacgccc tgcatgcggg acctgatcaa 1801 gctggctggg gtcacgctgg gacagaggcg agcccaggcg aggcggcaga ccatcaggca 1861 ttctaccagg gagaaggaca ggggacccac gaaagccacc accaccaagc tggtctacca 1921 gatcttcgat actttcttcg cagagcaaat tgaaaaggat gacagagaag acaaggagaa 1981 cgcctttaag cgccggcgat gtggcgtctg tgaggtgtgt cagcagcctg agtgtgggaa 2041 atgtaaagcc tgcaaggaca tggttaaatt tggtggcagt ggacggagca agcaggcttg 2101 ccaagagcgg aggtgtccca atatggccat gaaggaggca gatgacgatg aggaagtcga 2161 tgataacatc ccagagatgc cgtcacccaa aaaaatgcac caggggaaga agaagaaaca 2221 gaacaagaat cgcatctctt gggtcggaga agccgtcaag actgatggga agaagagtta 2281 ctataagaag gtgtgcattg atgcggaaac cctggaagtg ggggactgtg tctctgttat 2341 tccagatgat tcctcaaaac cgctgtatct agcaagggtc acggcgctgt gggaggacag 2401 cagcaacggg cagatgtttc acgcccactg gttctgcgct gggacagaca cagtcctcgg 2461 ggccacgtcg gaccctctgg agctgttctt ggtggatgaa tgtgaggaca tgcagctttc 2521 atatatccac agcaaagtga aagtcatcta caaagccccc tccgaaaact gggccatgga 2581 gggaggcatg gatcccgagt ccctgctgga gggggacgac gggaagacct acttctacca 2641 gctgtggtat gatcaagact acgcgagatt cgagtcccct ccaaaaaccc agccaacaga 2701 ggacaacaag ttcaaattct gtgtgagctg tgcccgtctg gctgagatga ggcaaaaaga 2761 aatccccagg gtcctggagc agctcgagga cctggatagc cgggtcctct actactcagc 2821 caccaagaac ggcatcctgt accgagttgg tgatggtgtg tacctgcccc ctgaggcctt 2881 cacgttcaac atcaagctgt ccagtcccgt gaaacgccca cggaaggagc ccgtggatga 2941 ggacctgtac ccagagcact accggaaata ctccgactac atcaaaggca gcaacctgga 3001 tgcccctgag ccctaccgaa ttggccggat caaagagatc ttctgtccca agaagagcaa 3061 cggcaggccc aatgagactg acatcaaaat ccgggtcaac aagttctaca ggcctgagaa 3121 cacccacaag tccactccag cgagctacca cgcagacatc aacctgctct actggagcga 3181 cgaggaggcc gtggtggact tcaaggctgt gcagggccgc tgcaccgtgg agtatgggga 3241 ggacctgccc gagtgcgtcc aggtgtactc catgggcggc cccaaccgct tctacttcct 3301 cgaggcctat aatgcaaaga gcaaaagctt tgaagatcct cccaaccatg cccgtagccc 3361 tggaaacaaa gggaagggca agggaaaagg gaagggcaag cccaagtccc aagcctgtga 3421 gccgagcgag ccagagatag agatcaagct gcccaagctg cggaccctgg atgtgttttc 3481 tggctgcggg gggttgtcgg agggattcca ccaagcaggc atctctgaca cgctgtgggc 3541 catcgagatg tgggaccctg cggcccaggc gttccggctg aacaaccccg gctccacagt 3601 gttcacagag gactgcaaca tcctgctgaa gctggtcatg gctggggaga ccaccaactc 3661 ccgcggccag cggctgcccc agaagggaga cgtggagatg ctgtgcggcg ggccgccctg 3721 ccagggcttc agcggcatga accgcttcaa ttcgcgcacc tactccaagt tcaaaaactc 3781 tctggtggtt tccttcctca gctactgcga ctactaccgg ccccggttct tcctcctgga 3841 gaatgtcagg aactttgtct ccttcaagcg ctccatggtc ctgaagctca ccctccgctg 3901 cctggtccgc atgggctatc agtgcacctt cggcgtgctg caggccggtc agtacggcgt 3961 ggcccagact aggaggcggg ccatcatcct ggccgcggcc cctggagaga agctccctct 4021 gttcccggag ccactgcacg tgtttgctcc ccgggcctgc cagctgagcg tggtggtgga 4081 tgacaagaag tttgtgagca acataaccag gttgagctcg ggtcctttcc ggaccatcac 4141 ggtgcgagac acgatgtccg acctgccgga ggtgcggaat ggagcctcgg cactggagat 4201 ctcctacaac ggggagcctc agtcctggtt ccagaggcag ctccggggcg cacagtacca 4261 gcccatcctc agggaccaca tctgtaagga catgagtgca ttggtggctg cccgcatgcg 4321 gcacatcccc ttggccccag ggtcagactg gcgcgatctg cccaacatcg aggtgcggct 4381 ctcagacggc accatggcca ggaagctgcg gtatacccac catgacagga agaacggccg 4441 cagcagctct ggggccctcc gtggggtctg ctcctgcgtg gaagccggca aagcctgcga 4501 ccccgcagcc aggcagttca acaccctcat cccctggtgc ctgccccaca ccgggaaccg 4561 gcacaaccac tgggctggcc tctatggaag gctcgagtgg gacggcttct tcagcacaac 4621 cgtcaccaac cccgagccca tgggcaagca gggccgcgtg ctccacccag agcagcaccg 4681 tgtggtgagc gtgcgggagt gtgcccgctc ccagggcttc cctgacacct accggctctt 4741 cggcaacatc ctggacaagc accggcaggt gggcaatgcc gtgccaccgc ccctggccaa 4801 agccattggc ttggagatca agctttgtat gttggccaaa gcccgagaga gtgcctcagc 4861 taaaataaag gaggaggaag ctgctaagga ctagttctgc cctcccgtca cccctgtttc 4921 tggcaccagg aatccccaac atgcactgat gttgtgtttt taacatgtca atctgtccgt 4981 tcacatgtgt ggtacatggt gtttgtggcc ttggctgaca tgaagctgtt gtgtgaggtt 5041 cgcttatcaa ctaatgattt agtgatcaaa ttgtgcagta ctttgtgcat tctggatttt 5101 aaaagttttt tattatgcat tatatcaaat ctaccactgt atgagtggaa attaagactt 5161 tatgtagttt ttatatgttg taatatttct tcaaataaat ctctcctata aaccaaaaaa 5221 aaaaaaaaaa aaaaaaaaaa aaaaaa //