LOCUS BC092512 5045 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens myosin VIIA and Rab interacting protein, mRNA (cDNA
clone MGC:104940 IMAGE:3093499), complete cds.
ACCESSION BC092512
VERSION BC092512.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5045)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5045)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 199 Row: e Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 59853351.
FEATURES Location/Qualifiers
source 1..5045
/db_xref="H-InvDB:HIT000334486"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104940 IMAGE:3093499"
/tissue_type="Lymph, normal germinal center B cells"
/clone_lib="NIH_MGC_50"
/lab_host="DH10B"
/note="Vector: pT7T3-Pac"
gene 1..5045
/gene="MYRIP"
/gene_synonym="DKFZp586F1018"
/gene_synonym="SLAC2-C"
/gene_synonym="SLAC2C"
/db_xref="GeneID:25924"
/db_xref="HGNC:HGNC:19156"
CDS 287..2866
/gene="MYRIP"
/gene_synonym="DKFZp586F1018"
/gene_synonym="SLAC2-C"
/gene_synonym="SLAC2C"
/codon_start=1
/product="myosin VIIA and Rab interacting protein"
/protein_id="AAH92512.1"
/db_xref="GeneID:25924"
/db_xref="HGNC:HGNC:19156"
/translation="MGRKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLD
EEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAW
VCCVCQQARLLRAQSLEWFYNNVKSRFKRFGSAKVLKNLYRKHRLESGACFDILGGSL
FESNLENEGSISGSDSTFYRQSEGHSVMDTLAVALRVAEEAIEEAISKAEAYGDSLDK
QNEASYLRDHKEELTEELATTILQKIIRKQKSKSEQQVEEEPGWPHPQSCSTKVADEG
TSASPGGYRAPAALWRSQSAFSITGEEALKTPPVETPSRQPRDQGQHPRAESALPSWK
SVDRLDETNLAPVLQSPDGNWVALKDGAPPPTRLLAKPKSGTFQALEVASSVASAYDE
MGSDSEEDFDWSEALSKLCPRSRALPRNPQPQPTQAQSSDQGPIAASPSSALSPNPEA
MCSDSETSSAGSSREVGHQARLSWLQRKAPRNPAAEKMRLHGELDVNFNPQLASRETS
DSSEPEEAPHTTDRRARRWRRARLGSEEPSKEPSSPSAQLRDLDTHQVSDDLSETDIS
NEARDPQTLTDTTEEKRRNRLYELAMKMSEKETSSGEDQESEPKTESENQKESLSSED
NSQSVQEELKKKFSAVSLCNISTEVLKVINATEELIAGSTGPWESPQVPPDRQKGMFP
RGTDQVRLDEQLTSLEENVYLAAGTVYGLETQLTELEDAARCIHSGTDETHLADLEDQ
VATAAAQVHHAELQISDIESRISALTIAGLNIAPCVRFTRRRDQKQRTQVQTIDTSRQ
QRRKLPAPPVKAEKIETSSVTTIKTFNHNFILQGSSTNRTKERKGTTKDLMEPALESA
VMY"
BASE COUNT 1448 a 1214 c 1222 g 1161 t
ORIGIN
1 ccgacgccgc tgcgctcccg cctcctgtcg gttcccgggt tcccgctgcg gctgcggttc
61 tggcagccga gcccccgcgg tgctgcagcc cagctttagc gcgcagaccg acccgcgccc
121 cttcttcgcc gccggcagcc tctaatccac gcggcgcgtt gcggcaggtg ccctgggcgt
181 actgaggcgc ggtggcctga gcccggccgc catcgatgac cccggtcgcg gacttgcttc
241 aggctggcca ccccccgtct tgtttcatca tctgtgttga gtaaccatgg ggaggaagct
301 ggacctgtct ggtttgactg atgatgaaac agagcatgtt cttcaggtgg ttcaaagaga
361 cttcaatctt cgcaaaaaag aagaagaacg actaagtgag ctgaagcaga agctggatga
421 ggaaggcagc aagtgcagca tcctctcgaa gcaccagcag tttgtggagc actgctgcat
481 gcgctgctgc tcgcccttca ccttcctcgt caacaccaag cgccagtgtg gagattgcaa
541 attcaatgtc tgcaagagct gctgctccta ccagaagcac gaaaaggcct gggtctgctg
601 cgtctgccag caagcgaggc ttctgagggc ccaatctctg gaatggttct acaataatgt
661 gaagagccgc ttcaagcgct ttggcagtgc caaggttctg aagaacctgt acaggaagca
721 ccggctggag agtggcgcgt gcttcgacat tctaggagga agcctttttg agtcaaacct
781 ggagaatgaa ggaagcattt ctggcagtga ttcaacattt tataggcagt cagaaggaca
841 tagtgtgatg gacaccttgg ctgtggccct acgggtggct gaagaggcca ttgaggaagc
901 aatttccaaa gcagaggcat atggggacag cctggacaag caaaatgagg ccagttacct
961 gcgggaccac aaggaggagc taactgagga actggccacg acaatcctgc agaagattat
1021 acgaaaacag aagagcaaaa gtgagcagca agtggaagaa gagccaggat ggccacatcc
1081 ccagagttgc agcacaaagg tggcagatga ggggacctca gcatcccctg gaggctaccg
1141 tgctcccgct gccctctgga ggtcccagtc tgccttctca atcactggag aagaagccct
1201 gaagacccct ccagtggaga ctccatcgag gcagccaagg gaccaaggcc aacacccgag
1261 agcagagtct gctctgccca gctggaagag tgtggacagg ctggatgaaa caaacctggc
1321 cccagttttg cagagccccg acgggaactg ggtggccctg aaggatggcg ctccaccccc
1381 cacccgacta ctggccaaac ctaagagcgg gacgtttcag gccctggagg tggcctccag
1441 tgtggcatct gcctacgatg agatgggctc cgatagcgag gaagactttg actggagtga
1501 ggccttgagc aagctgtgtc ccaggtcccg ggccctgccc aggaaccccc agcctcagcc
1561 cacacaggcc cagagctctg accaaggccc catagctgcc tccccatcct ctgcactctc
1621 ccccaaccct gaggccatgt gctctgactc ggagacctcc tccgcaggct cttcccgaga
1681 agttgggcac caggccagac tgtcctggtt gcagaggaag gcccccagga accctgcagc
1741 tgagaagatg cgcttgcatg gagagctgga cgtgaacttc aacccccagt tggccagcag
1801 ggagacctcg gacagcagcg agccggagga ggccccccac accacagacc ggcgggccag
1861 gaggtggaga agagcccgat tgggctcaga agagccaagc aaagaaccat cttcccccag
1921 cgcccagctc cgggatctag acacacatca ggtgtcggat gatttatcag agacagacat
1981 cagcaatgag gctcgggatc cccagactct cacagacacc acagaggaga aacggagaaa
2041 caggctgtac gagttagcaa tgaaaatgag tgaaaaggag acttcttcag gggaggatca
2101 ggagtctgag cccaagacag aatctgagaa ccagaaggaa agtctgtcct ctgaagacaa
2161 cagccagagt gtccaggaag agctgaagaa gaagttttct gctgtttctc tctgcaacat
2221 ctccacagaa gtcctgaaag tcatcaatgc cacagaggag ttgatagcag gatctacagg
2281 gccctgggag tccccacaag tccctcctga cagacagaag gggatgtttc ctcgtgggac
2341 agaccaagtg agactggatg agcagctgac ttccctggaa gaaaatgtat acctggcagc
2401 aggcactgtg tatggactgg agacccagct gactgagcta gaagatgccg cccgctgcat
2461 ccacagcggc actgatgaga cccatctggc ggatctggag gaccaggtgg ccacggctgc
2521 agcccaagtc caccatgctg aactccagat ttcagatatt gagagccgga tttcagccct
2581 gaccattgca ggattaaaca tagcaccatg tgtgcgcttc acaagaagac gggatcagaa
2641 gcaaaggacc caggtacaaa ccatagatac atcaaggcag caaaggagga aactgcctgc
2701 tccaccggtg aaagctgaaa aaattgagac atcttcagtg actaccatta aaacatttaa
2761 ccacaacttc attctccaag gctcctcaac aaacaggact aaggaaagga aaggcaccac
2821 caaggatttg atggagcctg ctctggagtc agctgtgatg tactgacacc atggaattcc
2881 actgccagtg acccactgcc tccggccgta cacgacagtg ccttgaccca acagccatcg
2941 agtactgtat gtatttccac ctgaggagaa ggcctgggga ggccacagtg caccattgca
3001 cagggctgtc ctgatacctc atccagaaag ccgtctcaga cttcagcact gcggtcttgc
3061 ccactctctg ccttaggctc ccaggggaat ccaagacaga aaatgaagac actggcttcc
3121 aacagcagcg ctccatgttt aagatacata ttttccctgt ttgctttgct actgtatgtt
3181 gactttaaga tcttttttta aatacatttg attcagctag tattccatgt caacaatttg
3241 tccaaaggaa aactgctgga gggaggtgga gggaggaagg tgggaattat tatttaatac
3301 atcattaatg cttattaatc tctcacaagc atctttgtct tgcaaatcct aagggaaaag
3361 caagtccctg cagtgagcac tagggacagt ctaatttggg gattgctcaa ccatcaagac
3421 tgcaggtctc ccttcagcca cctccttcct gctaaaagct tagcctacca cactaccagt
3481 cattcccatc gctttgcaat cacaagccac aggatgagaa gttctgactc actcatgcca
3541 tgcccagggc tatctgaaac aatgtctcat taagaattta gggttcttcc atgggcttac
3601 tgacagttgc ccagatctga aggggaaagg gtcttgagaa agaccatcac tggctcaact
3661 ttagggcact gtccagagtc aacatgatgt ggtttagcag tgatcacatc taaacaaagt
3721 ttaggtaaat gaattatcgc agagaaaaac cacatgagaa aatttttgta ctccaaattt
3781 acttcccaat aaatattcag caaagtagta aaatgacctt aaagataaaa atgattaggg
3841 aatagcctta gaaaatttat aggtataaaa aattcaagga caaactgtgc atttaatgga
3901 cacaagaatt gactctaact ccatgtctgt ggtttctttg aacccatatc aaatgtatga
3961 ctatttagag tgtttataag agataatgga actgaacttt cactcaatta attgggcatt
4021 aacaaccttc ttttatgttt gttcctgata tagtctgaat cttaggaaga aggtaaaaga
4081 aaggaggcaa gagaatagtt atgatgaata tgtgttaagt gcctgctctg aaggaggcaa
4141 tgttcttctc atttgaatcc ttatggcaac cttattcaat aggttttccc atatttcaga
4201 tttaataact gaaggccaga gagattaatt tgccaaagcc acacctttat gctaattatg
4261 attggaatgc atcacaaaag cctaactctg ttgttttcaa cctctacgtt attttgctgc
4321 tatgtgcatt tccagatctg attttctgct aacttgtgtg ctatgatcca ctcctgatgg
4381 gggtctacat taatcttcca gtactccttg ctgatgctgt gttatgtgtc atctaacaga
4441 aatgactcct ttgaaataag taaatctttg gctttttgtt ctgttggtgt gattcaaagc
4501 aaaacaaaca aacaaaaaca aattttaaga acacaacaaa aaagatttga cttccgaata
4561 gaatgttttc tttaagaggc atgaaaagca actattgttg tgttacagtg ttaaaaatat
4621 tcagttttct ttgacaaaaa tgtgtactgt gtaagccttg caaacaaaaa acaacaaaaa
4681 agaagcagca gcagcagcct gctgtgtggc atctgaactt ttataaaggt ttccttgtgc
4741 caaataagtg caaagattta atttactatt aaaaaccata agcatatgtt atagttccag
4801 aagaattatt ttgtcatcaa gtgattttga tctttagtgt caatatttat atttagatta
4861 atttttataa atgaaaatat tttaatggtt taagaaaatg aggacaacag gataatatct
4921 ttgatgactt ctgaaagtta tgcttccctt catgttatat gcacattgcc aagaattact
4981 gtcaagagaa atgataagta aaagtcattt atgaaaataa aaaaaaaaaa aaaaaaaaaa
5041 aaaaa
//