LOCUS BC091521 3237 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, mRNA (cDNA
clone MGC:111510 IMAGE:30388370), complete cds.
ACCESSION BC091521
VERSION BC091521.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3237)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3237)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 196 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13514830.
FEATURES Location/Qualifiers
source 1..3237
/db_xref="H-InvDB:HIT000334371"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:111510 IMAGE:30388370"
/tissue_type="Testis"
/clone_lib="NIH_MGC_180"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..3237
/gene="DDX10"
/gene_synonym="HRH-J8"
/db_xref="GeneID:1662"
/db_xref="HGNC:HGNC:2735"
/db_xref="MIM:601235"
CDS 78..2705
/gene="DDX10"
/gene_synonym="HRH-J8"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
/protein_id="AAH91521.1"
/db_xref="GeneID:1662"
/db_xref="HGNC:HGNC:2735"
/db_xref="MIM:601235"
/translation="MGKTANSPGSGARPDPVRSFNRWKKKHSHRQNKKKQLRKQLKKP
EWQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL
ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV
LRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQM
LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV
HEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFC
RLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDC
PEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDV
QKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGLAVAP
RVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTNDEVEEFRAYFNEKMSILQKGGKRL
EGTEHRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFL
DRDEEEEDADFLKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNF
KVNKKITFTDEGELVQQWPQMQKSAIKDAEEDDDTGGINLHKAKERLQEEDKFDKEEY
RKKIKAKHREKRLKEREARREANKRQAKAKDEEEAFLDWSDDDDDDDDGFDPSTLPDP
DKYRSSEDSDSEDMENKISDTKKKQGMKKRSNSEVEDVGPTSHNRKKARWDTLEPLDT
GLSLAEDEELVLHLLRSQS"
BASE COUNT 1083 a 613 c 766 g 775 t
ORIGIN
1 cccatgctgg ttccgtgagt ctggccttag gtgtctcgtg tctggggttg atccgagctg
61 tcgccgccgc cgccgcaatg ggcaaaacgg ccaactctcc gggttcggga gcccgacccg
121 acccggtgcg gagcttcaat cgctggaaga aaaaacacag ccataggcag aacaaaaaga
181 agcagttgag gaagcaactg aagaaacccg aatggcaggt cgagcgcgag agtatcagcc
241 gcctcatgca gaactatgaa aagataaatg taaatgaaat cacaagattt tcagattttc
301 ccttgtccaa aaaaacattg aaaggtttgc aagaagctca gtaccgtttg gtgactgaga
361 tacagaagca gaccattgga ttggctttgc aaggtaaaga tgtacttgga gcggccaaaa
421 ctggatctgg caagactctg gcttttcttg ttccagtgct ggaagcctta tatcgtctgc
481 aatggacttc aacagatggg ctgggggttc tcataatatc acctacgaga gaactggcct
541 atcagacctt tgaggttctc cgaaaagtag gaaagaatca tgacttctca gctggtctca
601 tcattggtgg aaaggatcta aaacacgaag ctgagaggat caacaacata aatatactcg
661 tgtgcacacc aggtcggctt cttcaacaca tggatgaaac agtatctttt catgctaccg
721 acctccaaat gttagttctt gatgaagcag atagaatctt ggatatgggc tttgctgata
781 ccatgaatgc tgttattgaa aatctcccca agaaacgtca gactttactt ttctcagcaa
841 cacaaactaa atctgtaaag gaccttgcac gcttgagttt gaaaaaccct gagtatgtct
901 gggttcatga aaaagcaaaa tatagcaccc ctgccacttt ggaacagaac tacatagtct
961 gtgagctgca gcaaaaaata agtgtgctgt attccttttt gagaagccat ctgaagaaga
1021 agagcattgt atttttttcc agttgcaaag aggtccagta tctgtaccga gtgttttgcc
1081 ggctacgtcc tggtgtttct atccttgcac tccatggtcg acagcagcaa atgagaagaa
1141 tggaagtcta taatgagttt gtccgtaaga gagctgcagt actctttgct actgatattg
1201 cagccagggg tctggatttc ccggccgtga attgggttct tcagtttgat tgtcctgagg
1261 atgccaacac atatattcac agagcaggta gaactgccag gtacaaagag gatggtgaag
1321 ctttgctaat tttgctaccc tcagaaaaag ctatggtgca gcagcttctt cagaagaaag
1381 tacctgtgaa ggaaatcaaa atcaatccag aaaaacttat agatgtccag aaaaaattgg
1441 aatctatttt agctcaagat caagatttaa aagaaagagc tcaaaggtgt ttcgtctcct
1501 atgtacgatc tgtatatctg atgaaggata aagaagtatt tgatgtgagc aagttaccta
1561 tacctgaata tgccctgtct cttggtcttg ctgtggcacc acgcgtaaga tttcttcaga
1621 aaatgcagaa acaacccacc aaagaattgg taaggagcca agccgataaa gtaattgagc
1681 caagggctcc ctccctcacc aatgacgaag tggaagaatt tagagcctac ttcaatgaga
1741 aaatgtccat ccttcaaaaa ggtggaaaaa gactcgaagg gacagagcac agacaggata
1801 atgatactgg taatgaagaa caggaagaag aagaagacga tgaagaagaa atggaagaga
1861 aactggcaaa agcaaaagga tctcaagccc catctcttcc taacaccagt gaggcacaga
1921 agatcaagga agttcctaca cagttcttgg acagagatga ggaggaagaa gatgctgatt
1981 tcttgaaggt gaagcggcat aatgtgtttg gattggacct taaagacgag aaaacattac
2041 agaagaaaga accttctaaa tccagcatca agaaaaaaat gaccaaagtt gcagaagcaa
2101 aaaaagtaat gaagagaaat tttaaagtga ataagaagat aacatttact gatgaagggg
2161 agttggttca gcagtggcca caaatgcaga aatctgccat caaggatgct gaggaagatg
2221 atgacacagg tggtatcaac ttacataaag caaaggaaag acttcaggaa gaggacaaat
2281 ttgacaaaga agaatatagg aaaaaaatta aggcaaagca tcgggagaaa agactgaaag
2341 aaagggaagc cagaagagaa gccaacaaga gacaagcaaa ggccaaagat gaagaggaag
2401 cctttctgga ttggagtgat gatgatgatg atgatgatga tggatttgat ccaagcacac
2461 tcccagatcc agataaatac agaagctctg aagattcaga tagtgaagat atggaaaata
2521 aaataagtga taccaagaag aagcagggga tgaagaagag gagcaacagt gaagtggaag
2581 acgtgggacc aacaagtcat aacagaaaga aggccaggtg ggacacttta gagcctttgg
2641 ataccggcct gtctttagca gaggatgaag agctggtgtt acatctgcta agaagtcaaa
2701 gctaaatact tcctgcgcct gccttctcct tgaaaccttg gttatgactg cgtaggcaag
2761 aagttgaaaa acagttgatt tgggggcact taggtaccat atgccccatt cccaaagggc
2821 acatttctgg atagaagcga tcgtatctcc aagtccctct cacaggacat gctttgtgcc
2881 atcactgagc atactcagat cgagggtgga tgataccatt tcctgacccc gttttccagc
2941 atgtgttctg ttagattttt atccatgggt tcctacgcct tgtcattgga aacactgcct
3001 ttgtcttact ggcaagttct ggagctcttg tgtcattgtt agaaatccct gtcttgctta
3061 ctgtacagaa gtttctgttg ctgttaaaat tgctcatgat ttcgacgtat ttaatatttt
3121 caaagagact atgatggacc agccctgaga aagaatgagt atttttgaat tgagatgatc
3181 aataataaac atatttccta taaaagaaag taaaaaaaaa aaaaaaaaaa aaaaaaa
//