LOCUS BC090954 6186 bp mRNA linear HUM 18-AUG-2006 DEFINITION Homo sapiens SET domain containing 2, mRNA (cDNA clone IMAGE:4397772), partial cds. ACCESSION BC090954 VERSION BC090954.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6186) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 6186) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 200 Row: a Column: 6. FEATURES Location/Qualifiers source 1..6186 /db_xref="H-InvDB:HIT000334316" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4397772" /tissue_type="Duodenum, adenocarcinoma" /clone_lib="NIH_MGC_88" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..6186 /gene="SETD2" /gene_synonym="FLJ22472" /gene_synonym="FLJ23184" /gene_synonym="HIF-1" /gene_synonym="HSPC069" /gene_synonym="HYPB" /gene_synonym="KIAA1732" /db_xref="GeneID:29072" /db_xref="HGNC:HGNC:18420" CDS <1..5538 /gene="SETD2" /gene_synonym="FLJ22472" /gene_synonym="FLJ23184" /gene_synonym="HIF-1" /gene_synonym="HSPC069" /gene_synonym="HYPB" /gene_synonym="KIAA1732" /codon_start=1 /product="SETD2 protein" /protein_id="AAH90954.1" /db_xref="GeneID:29072" /db_xref="HGNC:HGNC:18420" /translation="GFQNISRCKEKDLDDTCMLHKKSESPFRETEPLVSPHQDKLMSM PVMTVDYSKTVVKEPVDTRVSCCKTKDSDIYCTLNDSNPSLCNSEAENIEPSVMKISS NSFMNVHLESKPVICDSRNLTDHSKFACEEYKQSIGSTSSASVNHFDDLYQPIGSSGI ASSLQSLPPGIKVDSLTLLKCGENTSPVLDAVLKSKKSSEFLKHAGKETIVEVGSDLP DSGKGFASRENRRNNGLSGKCLQEAQEEGNSILPERRGRPEISLDERGEGGHVHTSDD SEVVFSSCDLNLTMEDSDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSED TDSDDSSIPRNRLQSVVVVPKNSTLPMEETSPCSSRSSQSYRHYSDHWEDERLESRRH LYEEKFESIASKACPQTDKFFLHKGTEKNPEISFTQSSRKQIDNRLPELSHPQSDGVD STSHTDVKSDPLGHPNSEETVKAKIPSRQQEELPIYSSDFEDVPNKSWQQTTFQNRPD SRLGKTELSFSSSCEIPHVDGLHSSEELRNLGWDFSQEKPSTTYQQPDSSYGACGGHK YQQNAEQYGGTRDYWQGNGYWDPRSGRPPGTGVVYDRTQGQVPDSLTDDREEEENWDQ QDGSHFSDQSDKFLLSLQKDKGSVQAPEISSNSIKDTLAVNEKKDFSKNLEKNDIKDR GPLKKRRQEIESDSESDGELQDRKKVRVEVEQGETSVPPGSALVGPSCVMDDFRDPQR WKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACG EDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTF VLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEP NCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGG ENRVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLE QKLTCLELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHL PIPTKNMLEESKVLPIIQRWSQTKTAVPPLSEGDGYSSENTSRAHTPLNTPDPSTKLS TEADTDTPKKLMFRRLKIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEEL QSQQLLPQQLPECKVDSETNIEASKLPTSEPEADAEIELKESNGTKLEEPINEETPSQ DEEEGVSDVESERSQEQPDKTVDISDLATKLLDSWKDLKEVYRIPKKSQTEKENTTTE RGRDAVGFRDQTPAPKTPNRSRERDPDKQTQNKEKRKRRSSLSPPSSAYERGTKRPDD RYDTPTSKKKVRIKDRNKLSTEERRKLFEQEVAQREAQKQQQQMQNLGMTSPLPYDSL GYNAPHHPFAGYPPGYPMQAYVDPSNPNAGKVLLPTPSMDPVCSPAPYDHAQPLVGHS TEPLSAPPPVPVVPHVAAPVEVSSSQYVAQSDGVVHQDSSVAVLPVPAPGPVQGQNYS VWDSNQQSVSVQQQYSPAQSQATIYYQGQTCPTVYGVTSPYSQTTPPIVQSYAQPSLQ YIQGQQIFTAHPQGVVVQPAAAVTTIVAPGQPQPLQPSEMVVTNNLLDLPPPSPPKPK TIVLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYD ENPMKASKKPKTAEADTSSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTE DFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVYKPKEDT ELE" BASE COUNT 1991 a 1268 c 1434 g 1493 t ORIGIN 1 ggatttcaga atattagtag gtgcaaagaa aaagacttgg atgatacctg catgctgcat 61 aagaagtcag aaagcccatt tagagaaaca gaacctctgg tgtcaccaca ccaagataaa 121 ctcatgtcta tgccagttat gactgtggat tattccaaaa cagtagttaa agaaccagtt 181 gatacgaggg tttcttgctg caaaaccaaa gattcagaca tatactgtac tttgaacgat 241 agcaaccctt ctttgtgtaa ctctgaagct gaaaatattg agccttcagt tatgaagatt 301 tcttcaaata gctttatgaa tgtgcatttg gaatcaaaac cagttatatg tgatagtaga 361 aatttgacag atcactcaaa atttgcatgt gaagaatata agcagagcat cggtagcact 421 agttcagctt ctgttaatca ttttgatgat ttatatcaac ctattgggag ttcaggtatt 481 gcttcatctc ttcagagtct tccaccagga ataaaggtgg acagtctaac tctcttgaaa 541 tgcggagaga acacatctcc agttctggat gcagtgctaa agagtaaaaa aagttcagag 601 tttttaaagc atgcagggaa agaaacaata gtagaagtag gtagtgacct tcctgattca 661 ggaaagggat ttgcttccag ggagaacagg cgtaataatg ggttatctgg gaaatgtttg 721 caagaggctc aagaagaagg gaattccata ttgcctgaaa gaagaggaag accagaaatc 781 tctttagatg aaagaggaga aggaggacat gtgcatactt ctgatgactc agaagttgta 841 ttttcttctt gtgatttgaa tttaaccatg gaagacagtg atggtgtaac ttatgcatta 901 aagtgtgaca gtagtggtca tgccccagaa attgtgtcta cagttcatga agattattct 961 ggctcttctg aaagttcaaa tgatgaaagt gattcagaag atacagattc ggatgatagc 1021 agtattccaa gaaaccgtct ccagtctgtt gtggttgtgc caaagaattc tactttgccc 1081 atggaagaaa caagtccttg ttcttctcgg agcagtcaaa gttatagaca ctattctgac 1141 cattgggaag atgagagatt ggagtcaagg agacatttgt atgaggaaaa atttgaaagt 1201 atagcaagta aagcctgtcc tcaaactgat aagtttttcc ttcataaagg aacagagaag 1261 aatccggaaa tttcttttac acagtccagt agaaaacaaa tagataaccg cctgcctgaa 1321 ctttctcatc ctcagagtga tggggttgat agtacaagtc atacagatgt gaaatctgac 1381 cctctgggtc acccaaattc agaggaaacc gtgaaagcca aaataccttc taggcagcaa 1441 gaagagctgc caatttattc ttctgatttt gaagatgtcc caaataagtc ttggcaacag 1501 accactttcc aaaacaggcc agatagtaga ctgggaaaaa cagaattgag tttttcttcc 1561 tcttgtgaga taccacatgt ggatggcttg cactcatcag aagagctcag aaacttaggt 1621 tgggacttct ctcaagaaaa gccttctacc acgtatcagc aacctgacag tagctatgga 1681 gcttgtggtg gacacaagta tcagcaaaat gcagaacagt atggtgggac acgtgattac 1741 tggcaaggca atggttactg ggatccaaga tcaggtagac ctcctggaac tggggttgtg 1801 tatgatcgaa ctcaaggaca agtaccagat tccctaacag atgatcgtga agaagaggag 1861 aattgggatc aacaggatgg atcccatttt tcagaccagt ccgataaatt tcttctatcc 1921 cttcagaaag acaaggggtc agtgcaagca cctgaaataa gcagcaattc cattaaggac 1981 actttagctg tgaatgaaaa gaaagatttt tcaaaaaact tagaaaaaaa tgatatcaaa 2041 gatagagggc ctcttaaaaa aaggaggcag gaaatagaga gtgattctga aagtgatggt 2101 gagcttcagg acagaaagaa agttagagtg gaggtagagc agggagagac atcagtgccc 2161 ccaggttcag cactggttgg gccctcctgt gtcatggatg acttcaggga cccacagcga 2221 tggaaggaat gtgccaagca agggaaaatg ccatgttact ttgatcttat tgaagaaaat 2281 gtttatttaa cagaaagaaa gaagaataaa tctcatcgag atattaagcg aatgcagtgt 2341 gagtgtacac ctctttctaa agatgaaaga gctcaaggtg aaatagcatg tggggaagat 2401 tgtcttaatc gtcttctcat gattgaatgt tcttctcggt gtccaaatgg ggattattgt 2461 tccaatagac ggtttcagag aaaacagcat gcagatgtgg aagtcatact cacagaaaag 2521 aaaggctggg gcttgagagc tgccaaagac cttccttcga acacctttgt cctagaatat 2581 tgtggagagg tactcgatca taaagagttt aaagctcgag tgaaggagta tgcacgaaac 2641 aaaaacatcc attactattt catggccctg aagaatgatg agataataga tgccactcaa 2701 aaaggaaatt gctctcgttt catgaatcac agctgtgaac caaattgtga aacccaaaaa 2761 tggactgtga acggacaact gagggttggg ttttttacca ccaaactggt tccttcaggc 2821 tcagagttaa cgtttgacta tcagttccag agatatggaa aagaagccca gaaatgtttc 2881 tgcggatcag ccaattgccg gggttacctg ggaggagaaa acagagtcag catcagagca 2941 gcaggaggga aaatgaagaa ggaacgatct cgtaagaagg attcagtgga tggagagcta 3001 gaagctctga tggaaaatgg tgagggtctc tctgataaaa accaggtgct cagcttatcc 3061 cggctaatgg ttagaattga aactttggag cagaaactta cctgtctgga actcatacag 3121 aacacacact cacagtcctg cctgaagtcc tttctggaac gtcatgggct gtctttgttg 3181 tggatctgga tggcagagct aggtgacggc cgggaaagta accagaagct tcaggaagag 3241 attataaaga ctttggaaca cttgcccatt cctactaaaa atatgttgga ggaaagcaaa 3301 gtacttccaa ttattcaacg ctggtctcag actaagactg ctgtccctcc gttgagtgaa 3361 ggagatgggt attctagtga gaatacatcg cgtgctcata caccactcaa cacacctgat 3421 ccttccacca agctgagcac agaagctgac acagacactc ccaagaaact aatgtttcgc 3481 agactgaaaa ttataagtga aaatagcatg gacagtgcaa tctctgatgc aaccagtgag 3541 ctagaaggca aggatggcaa agaggatctt gatcaattag aaaatgtccc tgtagaggaa 3601 gaggaagaat tgcagtcaca acagctactc ccacaacagc tgcctgaatg caaagttgat 3661 agtgaaacca acatagaagc tagtaagcta cctacatctg aaccagaagc tgacgctgaa 3721 atagagctca aagagagcaa cggcacaaaa ctagaagaac ctattaatga agaaacacca 3781 tcccaagatg aagaggaggg tgtgtctgat gtggagagtg aaaggagcca agaacagcca 3841 gataaaacag tggatataag tgatttggcc accaaactcc tggacagttg gaaagaccta 3901 aaggaggtat atcgaattcc aaagaaaagt caaactgaaa aggaaaacac aacaactgaa 3961 cgaggaaggg atgctgttgg cttcagagat caaacacctg ccccgaagac tcctaatagg 4021 tcaagagaga gagacccaga caagcaaact caaaataaag agaaaaggaa acgaagaagc 4081 tccctctcac caccctcttc tgcctatgag cggggaacaa aaaggccaga tgacagatat 4141 gatacaccaa cttctaaaaa gaaagtacga attaaagacc gcaataaact ttctacagag 4201 gaacgccgga agttgtttga gcaagaggtg gctcaacggg aggctcagaa acaacagcaa 4261 cagatgcaga acctgggaat gacatcacca ctgccctatg actctcttgg ttataatgcc 4321 ccgcatcatc cctttgctgg ttacccacca ggttatccca tgcaggccta tgtggatccc 4381 agcaacccta atgctggaaa ggtgctcctg cccacaccca gcatggaccc agtgtgttct 4441 cctgctcctt atgatcatgc tcagcccttg gtgggacatt ctacagaacc cctttctgcc 4501 cctccaccag taccagtggt gccacatgtg gcagctcctg tggaagtttc cagttcccag 4561 tatgtggccc agagtgatgg tgtagtacac caagactcca gcgttgctgt cttgccagtg 4621 ccggcccccg gcccagttca gggacagaat tatagtgttt gggattcaaa ccaacagtct 4681 gtcagtgtac agcagcagta ctctcctgca cagtctcaag caaccatata ttatcaagga 4741 cagacatgtc caacagtcta tggtgtgaca tcaccttatt cacagacaac tccaccaatt 4801 gtacagagtt atgcccagcc aagtcttcag tatatccagg ggcaacagat tttcacagct 4861 catccacaag gagtggtggt acagccagcc gcagcagtga ctacaatagt tgcaccaggg 4921 cagcctcagc ccttgcagcc atctgaaatg gttgtgacaa ataatctctt ggatctgccg 4981 cccccctctc ctcccaaacc aaaaaccatt gtcttacctc ccaactggaa gacagctcga 5041 gatccagaag ggaagattta ttactaccat gtgatcacaa ggcagactca gtgggatcct 5101 cctacttggg aaagcccagg agatgatgcc agccttgagc atgaagctga gatggacctg 5161 ggaactccaa catatgatga aaaccccatg aaggcctcga aaaagcccaa gacagcagaa 5221 gcagacacct ccagtgaact agcaaagaaa agcaaagaag tattcagaaa agagatgtcc 5281 cagttcatcg tccagtgcct gaacccttac cggaaacctg actgcaaagt gggaagaatt 5341 accacaactg aagactttaa acatctggct cgcaagctga ctcacggtgt tatgaataag 5401 gagctgaagt actgtaagaa tcctgaggac ctggagtgca atgagaatgt gaaacacaaa 5461 accaaggagt acattaagaa gtacatgcag aagtttgggg ctgtttacaa acccaaagag 5521 gacactgaat tagagtgact gttgggccag ggtgggagga tgggtggtca ggtaagacag 5581 actctaggga gaggaaatcc tgtgggcctt tctgtcccac ccctgtcagc actgtgctac 5641 tgatgataca tcaccctggg gaattcaacc ctgcagatgt caactgaagg ccacaaaaat 5701 gaactccatc tacaagtgat tacctagttg tgagctgttg gcatgtggtt agaagccatc 5761 agaggtgcaa gggcttagaa aagaccctgg ccagacctga ctccactctt aaacctgggt 5821 cttctccttg gcggtgctgt cagcgcacag acccatgcgc atccccaccc acaacccttt 5881 accctgatga tctgtattat attttaatgt atatgtgaat atattgaaaa taatttgttt 5941 tttcctggtt tttgtttggt tttcgttttg cttttagcct ctacatgcta ggatcacagg 6001 aagactttgt aaggacagtt taagttctcc tgcaaggttt aatttgttat catgtaaata 6061 ttccaaagca ggctgccttg tggttttggc cagccttgtg ctatgttgat aagattgatt 6121 tactgcttaa aatcacttta ctttatccaa tttttactga actttttatg taaaaaaaaa 6181 aaaaaa //