LOCUS BC090946 2385 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin specific peptidase 21, mRNA (cDNA clone
MGC:105052 IMAGE:3877298), complete cds.
ACCESSION BC090946
VERSION BC090946.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2385)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2385)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 200 Row: a Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48527958.
FEATURES Location/Qualifiers
source 1..2385
/db_xref="H-InvDB:HIT000334308"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:105052 IMAGE:3877298"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2385
/gene="USP21"
/gene_synonym="MGC3394"
/gene_synonym="USP16"
/db_xref="GeneID:27005"
/db_xref="HGNC:HGNC:12620"
/db_xref="MIM:604729"
CDS 326..2023
/gene="USP21"
/gene_synonym="MGC3394"
/gene_synonym="USP16"
/codon_start=1
/product="ubiquitin specific peptidase 21"
/protein_id="AAH90946.1"
/db_xref="GeneID:27005"
/db_xref="HGNC:HGNC:12620"
/db_xref="MIM:604729"
/translation="MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPGSG
PNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPL
PSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRL
GGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLG
NTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCE
AVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVP
SPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRST
TFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKL
TVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALC
NHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL"
BASE COUNT 563 a 691 c 619 g 512 t
ORIGIN
1 caacaaagat ggcggcggcc cctgcggcgg gagcgatctg ggcaacggct gcggctaaag
61 ctgcagccgg gcccacgggg gggctgcacg ggggtagtag ggggtggccc tgaactgggg
121 cctggccctg gctggcctct cccgccgcct cactggggga caggtactgg ggatacgatg
181 gctgattcga tagatctggt tcctgccctc agtgcgtata ctgctcccca ctttcgttga
241 tgtggtagtg gtgatgactg agccaaccac ctaatgtgga aatgagagga cagcaagatt
301 gtgggtccag cctgtggtgt ccacaatgcc ccaggcctct gagcaccgcc tgggccgtac
361 ccgagagcca cctgttaata tccagccccg agtgggatcc aagctaccat ttgcccccag
421 ggcccgcagc aaggagcgca gaaacccagg ctctgggcca aaccccatgt tacgacctct
481 gcctccccgg ccaggtctgc ctgatgaacg gctcaagaaa ctggagctgg gacggggacg
541 gacctcaggc cctcgtccca gaggccccct tcgagcagat catggggttc ccctgcctgg
601 ctcaccaccc ccaacagtgg ctttgcctct cccatctcgg accaacttag cccgttccaa
661 gtctgtgagc agtggggact tgcgtccaat ggggattgcc ttgggagggc accgtggcac
721 cggagagctt ggggctgcac tgagccgctt ggccctccgg cctgagccac ccactttgag
781 acgtagcact tctctccgcc gcctaggggg ctttcctgga ccccctaccc tgttcagcat
841 acggacagag ccccctgctt cccatggctc cttccacatg atatccgccc ggtcctctga
901 gcctttctac tctgatgaca agatggctca tcacacactc cttctgggct ctggtcatgt
961 tggccttcga aacctgggaa acacgtgctt cctgaatgct gtgctgcagt gtctgagcag
1021 cactcgacct cttcgggact tctgtctgag aagggacttc cggcaagagg tgcctggagg
1081 aggccgagcc caagagctca ctgaagcctt tgcagatgtg attggtgccc tctggcaccc
1141 tgactcctgc gaagctgtga atcctactcg attccgagct gtcttccaga aatatgttcc
1201 ctccttctct ggatacagcc agcaggatgc ccaagagttc ctgaagctcc tcatggagcg
1261 gctacacctt gaaatcaacc gccgaggccg ccgggctcca ccgatacttg ccaatggtcc
1321 agttccctct ccaccccgcc gaggaggggc tctgctagaa gaacctgagt taagtgatga
1381 tgaccgagcc aacctaatgt ggaaacgtta cctggagcga gaggacagca agattgtgga
1441 cctgtttgtg ggccagttga aaagttgtct caagtgccag gcctgtgggt atcgctccac
1501 gaccttcgag gttttttgtg acctgtccct gcccatcccc aagaaaggat ttgctggggg
1561 caaggtgtct ctgcgggatt gtttcaacct tttcactaag gaagaagagc tagagtcgga
1621 gaatgcccca gtgtgtgacc gatgtcggca gaaaactcga agtaccaaaa agttgacagt
1681 acaaagattc cctcgaatcc tcgtgctcca tctgaatcga ttttctgcct cccgaggctc
1741 catcaaaaaa agttcagtag gtgtagactt tccactgcag cgactgagcc taggggactt
1801 tgccagtgac aaagccggaa gtcctgtata ccagctgtat gccctttgca accactcagg
1861 cagcgtccac tatggccact acacagccct gtgccggtgc cagactggtt ggcatgtcta
1921 caatgactct cgtgtctccc ctgtcagtga aaaccaggtg gcatccagcg agggctacgt
1981 gctgttctac caactgatgc aggagccacc ccggtgcctg tgacacctct aagctctggc
2041 acctgtgaag ccctttaaac acccttaagc cccaggctcc ccgtttacct cagagacgtc
2101 tatttttgtg tctttttaat cggggagggg ggagggggtg gttgtagctc cattattttt
2161 tttattaaaa aatacccttc cacctggagg ctcccttgtc tcccagtccc atgtacaaag
2221 ctcaccaagc ccctgcccat gtacagcccc cagaccctct gcaatatcac tttttgtgaa
2281 taaatttatt aagaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//